Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,583,825 – 10,583,939 |
Length | 114 |
Max. P | 0.881459 |
Location | 10,583,825 – 10,583,939 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 87.20 |
Mean single sequence MFE | -34.26 |
Consensus MFE | -25.46 |
Energy contribution | -25.54 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.21 |
Mean z-score | -2.17 |
Structure conservation index | 0.74 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881459 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10583825 114 - 22407834 UUUGGAAAGGCUCUAUUGAA-CAGCUUUUCAUGGUAGCCCCGCUUUUCUGGCUGUGUAAAAGCUGUGAAAAGAAAACCCGACAUCUAUUGGGUUGUGGGGUGAAAAUAUGAAAAG ..((((.....)))).....-...(((((((((...(((((((((((((((((.......))))).)))))...(((((((......)))))))))))))).....))))))))) ( -36.90) >DroSec_CAF1 71290 114 - 1 UUUGGAAAGGAUCUAUUGAA-CAGCUUUUUAUGUCAGCCCCGCUUUUCUUGCUGUGUAAAAGCUGUGGAAAGAAAACCCGACAUCUAUUGGGUUGUGGGGGGAAAAUAUGAAAAG ..((((.....)))).....-...((((((((((...((((.((((((..(((.......)))...))))))..(((((((......)))))))....))))...)))))))))) ( -32.40) >DroSim_CAF1 71806 115 - 1 UUUGGAAAGGCUCCAUUGAACCAGCUUUUUAUGUCAGCCCCGCUUUUCUUGCUGUGUAAAAGCUGAGGAAAGAAAACCCGACAUCCAUUGGGUUGUGGGGGGAAAAUAUGAAAAG ..((((.....)))).........((((((((((...((((.(((((((((((.......))).))))))))..(((((((......)))))))....))))...)))))))))) ( -36.80) >DroEre_CAF1 72245 111 - 1 UUUGGGAAGGCUGCAUUAAA-CAGCUUUUUGUCGGCACCUUGCUUUUCUUGCUGUGUAAAAGCUGUGGAAAGAAAACCCCACCUCUGUUGGGUG---GGCGGAAAAUAUGAAAAG ..........((((.((..(-((((((((...(((((............)))))...)))))))))..))........((((((.....)))))---)))))............. ( -30.90) >DroYak_CAF1 74130 111 - 1 UUUGGGAUGGCUGUAUUAAA-CAGCUUUUUAUAGCAGCCCCGCUUUUCUUGCUGUGUAAGAGCUGUGGAAAGAAAACCCGACAUCUAUUGGGUU---GGGGAAAAAUAUGAAAAG .........(((((.....)-))))((((((((....((((.((((((..(((.......)))...))))))..(((((((......)))))))---)))).....)))))))). ( -34.30) >consensus UUUGGAAAGGCUCUAUUGAA_CAGCUUUUUAUGGCAGCCCCGCUUUUCUUGCUGUGUAAAAGCUGUGGAAAGAAAACCCGACAUCUAUUGGGUUGUGGGGGGAAAAUAUGAAAAG ........................(((((((((....((((.((((((..(((.......)))...))))))..(((((((......)))))))...)))).....))))))))) (-25.46 = -25.54 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:17 2006