Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,582,997 – 10,583,090 |
Length | 93 |
Max. P | 0.747301 |
Location | 10,582,997 – 10,583,090 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 92.11 |
Mean single sequence MFE | -30.34 |
Consensus MFE | -26.32 |
Energy contribution | -27.04 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.07 |
Mean z-score | -1.35 |
Structure conservation index | 0.87 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10582997 93 + 22407834 A--GGGGCGCAGCCAGGUGGGUGGGACCAAUCCGAGGUGUAAACAAGGCGCUUAAUUUGCAUUCGCCUGGUUGGCAGUUAAUUUAUUUGCAAGUC .--..(((.(((((((((((((((((....))).((((((.......))))))......))))))))))))))((((.........))))..))) ( -33.90) >DroSec_CAF1 70478 93 + 1 A--GGGGGGCAGUCAGGUGGGUGGGACCAAUCCGAGGUGUAAACAACGCGCUUAAUUUGCAUUCGCCCGGUUGGCAGUUAAUUUAUUUGCAAGUC (--((..(((.(((((.((((((((..(((...(((((((.....)))).)))...)))..)))))))).))))).)))..)))........... ( -25.40) >DroSim_CAF1 71002 93 + 1 G--GGGGGGCAGCCGGGUGGGUGGGACCAAUCCGAGGUGUAAACAACGCGCUUAAUUUGCAUUCGCCCGGUUGGCAGUUAAUUUAUUUGCAAGUC .--......(((((((((((((((((....)))(((((((.....)))).)))......))))))))))))))((((.........))))..... ( -34.10) >DroEre_CAF1 71435 91 + 1 ----AGGGGCAGCCAGGUGGGACGGACCAAUCCGAGGUGUAAACAACGCUCUUAAUUUGCAUUCGCCUGGUUGGCAGUUAAUUUAUUUGCAAGUC ----.....((((((((((((.((((....)))).(((((.....)))))...........))))))))))))((((.........))))..... ( -29.10) >DroYak_CAF1 73298 95 + 1 AAGAAGGGCCAGUCAGGUGGGACGGACCAAUCCGAGGUGUAAACAACGCUCUUAAUUUGCAUUCGCCUGGUUGGCAGUUAAUUUAUUUGCAAGUC .......((((..((((((((.((((....)))).(((((.....)))))...........))))))))..)))).................... ( -29.20) >consensus A__GGGGGGCAGCCAGGUGGGUGGGACCAAUCCGAGGUGUAAACAACGCGCUUAAUUUGCAUUCGCCUGGUUGGCAGUUAAUUUAUUUGCAAGUC .........(((((((((((((((((....)))(((((((.....)))).)))......))))))))))))))((((.........))))..... (-26.32 = -27.04 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:15 2006