Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,582,827 – 10,582,919 |
Length | 92 |
Max. P | 0.541552 |
Location | 10,582,827 – 10,582,919 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -20.35 |
Consensus MFE | -16.49 |
Energy contribution | -16.72 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.06 |
Structure conservation index | 0.81 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541552 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10582827 92 - 22407834 A---ACCAUCACGGCUCUGCCAAAUUUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA .---........(((...)))..(((((((...........)))))))((((((((((((((.....))))))))).)))))............. ( -18.50) >DroSec_CAF1 70312 92 - 1 A---ACCAUCACGGCUCGGCCAAAUUUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA .---.........(((.(((...(((((((...........)))))))(((.((((((((((.....)))))))))))))))))))......... ( -20.30) >DroSim_CAF1 70836 92 - 1 A---ACCAUCACGGCUCGGCCAAAUUUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA .---.........(((.(((...(((((((...........)))))))(((.((((((((((.....)))))))))))))))))))......... ( -20.30) >DroEre_CAF1 71272 92 - 1 A---CCCAUCACGGCUCUGCCAAAUUUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA .---........(((...)))..(((((((...........)))))))((((((((((((((.....))))))))).)))))............. ( -18.50) >DroYak_CAF1 73128 92 - 1 A---CCCAUCACGGCGCUGCCAAAUUUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA .---...........((((....(((((((...........)))))))((((((((((((((.....))))))))).)))))))))......... ( -21.00) >DroAna_CAF1 74271 91 - 1 GAAAGCCCUC--U--GCGCCAAAAUGUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA ((((((....--.--((((......))))......)))))).((((((((((((((((((((.....))))))))).))))).....)))))).. ( -23.50) >consensus A___ACCAUCACGGCUCGGCCAAAUUUGUCCUUUCGCUUUCGACAAAUGCAUAUGGAAAUUUUAUGCAAAUUUCCAUUGUGUCAGCAAUUUGUAA ............(((...)))..(((((((...........)))))))((((((((((((((.....))))))))).)))))............. (-16.49 = -16.72 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:14 2006