Locus 3629

Sequence ID 2L_DroMel_CAF1
Location 10,582,527 – 10,582,627
Length 100
Max. P 0.848222
window5725

overview

Window 5

Location 10,582,527 – 10,582,627
Length 100
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 81.70
Mean single sequence MFE -31.67
Consensus MFE -20.77
Energy contribution -20.42
Covariance contribution -0.36
Combinations/Pair 1.23
Mean z-score -2.47
Structure conservation index 0.66
SVM decision value 0.78
SVM RNA-class probability 0.848222
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10582527 100 + 22407834
UCUUUGGGGACAUUUUGAGAAGUGUCGCCAAUGUGGGAAAGUAAUCAGAAAAUAUUUUGUCAGCUUCAGUUGCA----------CUAGCUGGCGUAACUUUUCAU------CCGCC
...((((.(((((((....))))))).)))).((((((......)).(((((.....((((((((..((.....----------))))))))))....)))))..------)))). ( -29.70)
>DroPse_CAF1 73249 98 + 1
UCUUUGGGGACAUUGU--GAAGUGUUGCCAGUGUGGAAAAGUAAUCAAAAGAUAUUUUGUCAGCUUCGCCAGCA----------GACGCUGGCACAACUUUCCUC------UUGCC
...((((.((((((..--..)))))).)))).(.((((((((...(((((....)))))...)))).((((((.----------...))))))......)))).)------..... ( -30.60)
>DroSec_CAF1 70011 100 + 1
UCUUUGGGGACAUUUUCAGAAGUGUCGCCAAUGUGGGAAAGUAAUCAGAAAAUAUUUUGUCAGCUUCAGUUGCA----------CUGGCUGGCGAAACUUUACAU------CCGCC
...((((.(((((((....))))))).)))).((((((((((.............(((((((((..(((.....----------)))))))))))))))))...)------)))). ( -30.91)
>DroEre_CAF1 70962 107 + 1
UCUUUGGGGACAUUUU--GAAGUGUUGCCAAUGUGGGAAAGUAAUCAGAAAAUAUUUUGUCAGCUUCAGUUGCACUAUAGUGCUGUAGCUGG-GAAACUUUUCAC------CCGCC
...((((.((((((..--..)))))).)))).(((((...(....).(((((...(((.((((((.((...((((....)))))).))))))-.))).))))).)------)))). ( -33.40)
>DroYak_CAF1 72825 104 + 1
UCUUUGGGGACAUUUU--GAAGUGUUGCCAAUGUGGGAAAGUAAUCAGAAAAUAUUUUGUCAGCUUCAGUUGCA----------GUAGCUGGCGAAACUUUUCACUACUUUCCGCC
...((((.((((((..--..)))))).))))....((((((((....(((((..(((((((((((.(.......----------).))))))))))).)))))..))))))))... ( -34.80)
>DroPer_CAF1 75213 94 + 1
UCUUUGGGGACAUUGU--GAAGUGUUGCCAGUGUGGAAAAGUAAUCAAAAGAUAUUUUGUCAGCUUCGCCAGCA----------GACGCUGGCACAACUUUCCUC------U----
...((((.((((((..--..)))))).)))).(.((((((((...(((((....)))))...)))).((((((.----------...))))))......)))).)------.---- ( -30.60)
>consensus
UCUUUGGGGACAUUUU__GAAGUGUUGCCAAUGUGGGAAAGUAAUCAGAAAAUAUUUUGUCAGCUUCAGUUGCA__________GUAGCUGGCGAAACUUUUCAC______CCGCC
...((((.((((((......)))))).)))).(((((((.((....((((....))))(((((((.....................)))))))...)))))))))........... (-20.77 = -20.42 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:13 2006