Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,578,487 – 10,578,581 |
Length | 94 |
Max. P | 0.958962 |
Location | 10,578,487 – 10,578,581 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 76.19 |
Mean single sequence MFE | -22.54 |
Consensus MFE | -13.12 |
Energy contribution | -13.07 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.29 |
Mean z-score | -2.16 |
Structure conservation index | 0.58 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.958962 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10578487 94 - 22407834 AAAAAAAAAAAAUUGUUCUCGUUGCGCAAAUGUUGCAUUAUAGACUACGAGUAGAGUUCC-AUGGUGGAAGCAAGUGUGGCAGAUGAGAAUGGGG ............(..((((((((.((((..((((.((((((.((((.(.....)))))..-))))))..))))..))))...))))))))..).. ( -24.50) >DroSec_CAF1 66020 86 - 1 --------AAAAUUGUUCUCGUUGCGCAAAUGUUGCAUUAUAGACUACGAGUAGAGUUCC-AUGAAGGAAACAAAUGUGGCAGAUGAGAAUGGGG --------....(..((((((((.......(((..((((.....(((....)))..((((-.....))))...))))..)))))))))))..).. ( -21.81) >DroSim_CAF1 66008 87 - 1 -------AAAAAUUGUUCUCGUUGCGCAAAUGUUGCAUUAUAGACUACGAGUAGAGUUCC-AUGAAGGAACCAAAUGUGGCAGAUGAGAAUGGGG -------.....(..((((((((.......(((..((((.....(((....))).(((((-.....)))))..))))..)))))))))))..).. ( -24.51) >DroEre_CAF1 67093 79 - 1 --------AAAAUUGUUCUCGUUGCGCAAAUGUUGCAUUAUAGACUA------GAGAGCC-AUG-AGGAAGCAAGUGUGGCAGAUGAGGACGGGG --------....(((((((((((.((((..((((...((((.(.((.------...))).-)))-)...))))..))))...))))))))))).. ( -21.30) >DroYak_CAF1 68880 72 - 1 -------AAAAAUUGUUCUCGUUGCGCAAAUGUUGCAUUAUAGACUA------GAG---------AGGAAGCAAAUGUGGCAGAUGAGAG-UAGG -------.....(((((((((((..((.....((((...........------...---------.....)))).....)).))))))))-))). ( -14.21) >DroAna_CAF1 70090 81 - 1 -------AAAAGUGGUUCUGGCUGCGCAAGUGUUGCAUUAUAGACUC------CAGCACGAAUG-GGGAGGCACGGCCAGCAGCUACGAGCUGGC -------....(((((((((((((.((.((((...)))).....(((------((.......))-)))..)).))))))).))))))........ ( -28.90) >consensus _______AAAAAUUGUUCUCGUUGCGCAAAUGUUGCAUUAUAGACUA______GAGUUCC_AUG_AGGAAGCAAAUGUGGCAGAUGAGAAUGGGG ............((((((((((((((((.....)))..............................(....).......))).)))))))))).. (-13.12 = -13.07 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:09 2006