Locus 3625

Sequence ID 2L_DroMel_CAF1
Location 10,575,199 – 10,575,306
Length 107
Max. P 0.652373
window5720

overview

Window 0

Location 10,575,199 – 10,575,306
Length 107
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 91.89
Mean single sequence MFE -25.54
Consensus MFE -23.01
Energy contribution -23.41
Covariance contribution 0.40
Combinations/Pair 1.18
Mean z-score -1.21
Structure conservation index 0.90
SVM decision value 0.25
SVM RNA-class probability 0.652373
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10575199 107 + 22407834
AGCUAUUGCCUCGCAUUGAUUUGUCUUGAUU-------UUGGGAUGGGAGUCAGAUUUUGAUUUCCAUUUCAACGCCCGCUGUCAUCGCUUUUGGCCUUUAUUUACCAUUUUGC
.......(((..((..((((..((...(...-------(((..(((((((((((...)))))))))))..)))..)..)).))))..))....))).................. ( -25.50)
>DroSec_CAF1 62781 107 + 1
AGCUAUAGCCUCGCAUUGAUUUGCUUUGAUU-------UUGGGAUGGGAGUCGGAUUUUGACUUCCAUUUCAACGCCCGCUGUCAUCGCUUUUGGCCUUUAUUUACCAUUUUGC
.......(((..((..((((..((...(...-------(((..((((((((((.....))))))))))..)))..)..)).))))..))....))).................. ( -28.90)
>DroSim_CAF1 62580 107 + 1
AGCUAUAGCCUCGCAUUGAUUUGCUUUGAUU-------UUGGGAUGGGAGUCGGAUUUUGAUUUCCAUUUCAACGCCCGCUGUCAUCGCUUUUGGCCUUUAUUUACCAUUUUGC
.......(((..((..((((..((...(...-------(((..((((((((((.....))))))))))..)))..)..)).))))..))....))).................. ( -26.60)
>DroEre_CAF1 63993 106 + 1
-GCUAUAGUCGCGCAUUGAUUUACUUUGAUU-------ACGGGAUGGGAGUCGGAUUUUGAUUUCCAUUUCAACGCCCGCUGUCAUCGCUUUCGGCCUUUAUUUACCAUUUUGC
-((.((((.((.((..(((((......))))-------).(..((((((((((.....))))))))))..)...)).))))))....))......................... ( -22.70)
>DroYak_CAF1 65379 114 + 1
CGCUAUAGCCUCGCAUUGAUUUGCUUUGAUUUUGCUUUUCGGAAUGGGAGUCGGAUUUUGAUUUCCAAUUCAACGCCCGCUGUCAUCGCUUUUGGCCUUUAUUUACCAUUUUGC
.((((.(((...(((......)))..((((...((......((((((((((((.....)))))))).)))).......)).))))..)))..)))).................. ( -24.02)
>consensus
AGCUAUAGCCUCGCAUUGAUUUGCUUUGAUU_______UUGGGAUGGGAGUCGGAUUUUGAUUUCCAUUUCAACGCCCGCUGUCAUCGCUUUUGGCCUUUAUUUACCAUUUUGC
.(((..(((...(((......)))..((((........(((((((((((((((.....)))))))))))))))........))))..)))...))).................. (-23.01 = -23.41 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:09 2006