Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,572,368 – 10,572,462 |
Length | 94 |
Max. P | 0.721748 |
Location | 10,572,368 – 10,572,462 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 73.37 |
Mean single sequence MFE | -23.54 |
Consensus MFE | -14.90 |
Energy contribution | -14.46 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.26 |
Mean z-score | -1.42 |
Structure conservation index | 0.63 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10572368 94 + 22407834 CAACUCUUCG-----ACUCCACCAUCAUCA----CCACCACCUCCUCGUGGCCAGAAAACUUUGUGUCCUGGCAACAAUUUUGGCCA----UUGUGUGGCC-CUAGUU ..........-----...............----((((((.......((((((((((....((((((....)).)))))))))))))----))).))))..-...... ( -20.41) >DroSec_CAF1 59989 98 + 1 CAACUCUACG-----ACUCCACCAUCACCACCGACCACCACCUCCUCCUGGUCAGGAAACUUUGUGUCCUGGCAACAAUUUUGGCCA----UUGUGUGGCC-CUAGUU ..........-----......(((.(((....(((((...........)))))((....))..)))...)))....((((..(((((----(...))))))-..)))) ( -20.30) >DroSim_CAF1 59774 98 + 1 CAACUCUACG-----ACUCCACCAUCACCACCGACCACCACCUCCUCCUGGUCAGGAAACUUUGUGUCCUGGCAACAAUUUUGGCCA----UUGUGUGGCC-CUAGUU ..........-----......(((.(((....(((((...........)))))((....))..)))...)))....((((..(((((----(...))))))-..)))) ( -20.30) >DroEre_CAF1 61070 78 + 1 ------------------C---CAUCUCCC----CCACCAGCUGCUCCUGGCCAGGAAACUUUGUGUCCUGGCAACAAUUUUGGCCA----UUGUGUGGCC-CUAGUU ------------------.---........----....(((......)))(((((((.((...)).)))))))...((((..(((((----(...))))))-..)))) ( -23.00) >DroAna_CAF1 64520 99 + 1 CAAUCGUCCGCCCGGAGUCUGCC--------GGAUCUCUGCCUGU-CCCCGGCAGAAAACUUUGUGUCCAGGCAACAAUUUUGGCCGAAUGCUCUGUGGCCCCGAGUU ...(((...((((((((((.(((--------(((....((((((.-.(...(((((....))))))..)))))).....)))))).)...)))))).)))..)))... ( -33.70) >consensus CAACUCUACG_____ACUCCACCAUCACCA__GACCACCACCUCCUCCUGGCCAGGAAACUUUGUGUCCUGGCAACAAUUUUGGCCA____UUGUGUGGCC_CUAGUU .....................................((((.......(((((((((....((((((....)).)))))))))))))........))))......... (-14.90 = -14.46 + -0.44)
Location | 10,572,368 – 10,572,462 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 73.37 |
Mean single sequence MFE | -31.61 |
Consensus MFE | -12.88 |
Energy contribution | -12.76 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.20 |
Mean z-score | -1.83 |
Structure conservation index | 0.41 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10572368 94 - 22407834 AACUAG-GGCCACACAA----UGGCCAAAAUUGUUGCCAGGACACAAAGUUUUCUGGCCACGAGGAGGUGGUGG----UGAUGAUGGUGGAGU-----CGAAGAGUUG .(((..-.((((((..(----(.((((...((((.(((((((.((...)).))))))).)))).....)))).)----)..)).))))..)))-----.......... ( -28.00) >DroSec_CAF1 59989 98 - 1 AACUAG-GGCCACACAA----UGGCCAAAAUUGUUGCCAGGACACAAAGUUUCCUGACCAGGAGGAGGUGGUGGUCGGUGGUGAUGGUGGAGU-----CGUAGAGUUG ..(((.-(((..(((.(----(.((((..((..(..((((((.((...)).))))..((....)).))..)..))...)))).)).)))..))-----).)))..... ( -33.00) >DroSim_CAF1 59774 98 - 1 AACUAG-GGCCACACAA----UGGCCAAAAUUGUUGCCAGGACACAAAGUUUCCUGACCAGGAGGAGGUGGUGGUCGGUGGUGAUGGUGGAGU-----CGUAGAGUUG ..(((.-(((..(((.(----(.((((..((..(..((((((.((...)).))))..((....)).))..)..))...)))).)).)))..))-----).)))..... ( -33.00) >DroEre_CAF1 61070 78 - 1 AACUAG-GGCCACACAA----UGGCCAAAAUUGUUGCCAGGACACAAAGUUUCCUGGCCAGGAGCAGCUGGUGG----GGGAGAUG---G------------------ .(((((-(((((.....----)))))....((((((((((((.((...)).)))))))....))))))))))..----........---.------------------ ( -26.50) >DroAna_CAF1 64520 99 - 1 AACUCGGGGCCACAGAGCAUUCGGCCAAAAUUGUUGCCUGGACACAAAGUUUUCUGCCGGGG-ACAGGCAGAGAUCC--------GGCAGACUCCGGGCGGACGAUUG .......((((...........))))..((((((((((((((........(((((((((...-.).))))))))...--------.......))))))).))))))). ( -37.57) >consensus AACUAG_GGCCACACAA____UGGCCAAAAUUGUUGCCAGGACACAAAGUUUCCUGACCAGGAGGAGGUGGUGGUC__UGGUGAUGGUGGAGU_____CGUAGAGUUG .......((((...........))))...........(((((.((...)).)))))((((........)))).................................... (-12.88 = -12.76 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:07 2006