Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,566,454 – 10,566,558 |
Length | 104 |
Max. P | 0.999175 |
Location | 10,566,454 – 10,566,558 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 93.84 |
Mean single sequence MFE | -24.72 |
Consensus MFE | -24.04 |
Energy contribution | -23.36 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.18 |
Mean z-score | -1.92 |
Structure conservation index | 0.97 |
SVM decision value | 3.41 |
SVM RNA-class probability | 0.999175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10566454 104 - 22407834 GGAGGGAGAGAAAACCAGAAACAAACCAUGAAUUCCUUUAACGAUUAAACAAGGAGCAGGAUACCAUAUAGGAUACAGUGUUCCUUCCUCCUUCUCCCUGCAAA (.((((((((.......................(((((............)))))(.((((........((((........)))))))).))))))))).)... ( -23.00) >DroSec_CAF1 54086 104 - 1 GGAGGGGGGGAAAACCAGAAACAAACCAUGAAUUCCUUUAACGAUUAAACAAGGAGCAGGAUACCAUAUAGGAUACAGUGUUCCUUCCUUCUUCUCCCCGCAAA ((((((((((((.((..........((.((...(((((............))))).))))...((.....)).....)).))))))))))))............ ( -23.60) >DroSim_CAF1 53823 104 - 1 GGAGGGAGGGAAAACCAGAAACAAACCAUGAAUUCCUUUAACGAUUAAACAAGGAGCAGGAUACCAUAUAGGAUACAGUGUUCCUUCCUCCUUCUCCCCGCAAA (((((((((((..............((.((...(((((............))))).))))...((.....))........)))))))))))............. ( -25.10) >DroEre_CAF1 54655 101 - 1 GGAGGAGGGAAAAACCAGAAACAAACCAUGAAUUCCUUUAACGAUUAAACAAGGAGCAGGAUACCAUAUAGGAUACAGUGUUCCUUCCUCC---UCCUUCCGAA ((((((((((..((((.........((.((...(((((............))))).))))...((.....)).....).)))..)))))))---)))....... ( -26.50) >DroYak_CAF1 56390 103 - 1 GGAGGAGGGAAAAACCAGAAACAAACCAUGAAUUCCUUUAACGAUUAAACAAGGAGCAGGAUACCAUAUAGGAUACAGUGUUCCUUCCUCCCU-UCCCUUCAAA (((((((((((..............((.((...(((((............))))).))))...((.....))........)))))))))))..-.......... ( -25.40) >consensus GGAGGGGGGGAAAACCAGAAACAAACCAUGAAUUCCUUUAACGAUUAAACAAGGAGCAGGAUACCAUAUAGGAUACAGUGUUCCUUCCUCCUUCUCCCUGCAAA (((((((((((..............((.((...(((((............))))).))))...((.....))........)))))))))))............. (-24.04 = -23.36 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:06 2006