Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,564,101 – 10,564,201 |
Length | 100 |
Max. P | 0.960072 |
Location | 10,564,101 – 10,564,201 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 93.31 |
Mean single sequence MFE | -19.10 |
Consensus MFE | -16.00 |
Energy contribution | -16.28 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -1.87 |
Structure conservation index | 0.84 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.960072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10564101 100 - 22407834 UAAAAUGCAAAUUUAAAUAGAGAAUCGGCAAAGUUUACAUAAAUUCUGGCCUUACAUUUUAAAGCCAGCCGAAAAUGUUGCUGGCUAAAACAAUUUGAAU ..........((((((((.(......(((..(((((....)))))...)))...........(((((((..........)))))))....).)))))))) ( -19.10) >DroSec_CAF1 51730 98 - 1 UAAAAUGCAAAUUUAAAUA--AAAUCGGCAAAGUUUACAUAAAUUCUGGCCCUACAUUUUAAAGCCAGACGAAAAUGUUGCUGGCUAAAACAAUUUGAAU .......((((((....((--((((.(((..(((((....)))))...)))....)))))).((((((.(((.....))))))))).....))))))... ( -18.20) >DroSim_CAF1 51468 98 - 1 UAAAAUGCAAAUUUAAAUA--GAAUCGGCAAAGUUUACAUAAAUUCUGGCCUUACAUUUUAAAGCCAGACGAAAAUGUUGCUGGCUAAAACAAUUUGAAU .......((((((....((--(...((((((.((((.(......((((((.(((.....))).)))))).).)))).)))))).)))....))))))... ( -19.20) >DroEre_CAF1 52339 95 - 1 UAAAAUGCAAAUUUAAAUA--GAAUCGCCGAAGUUCACAUAAG-UCUGGCCGUACAU--UAAAGCCAGCCGAAAAUGUUGCUGGCUAACACAGUUUGAAU ..........((((((((.--(....(((((..(......)..-)).))).......--...(((((((..........)))))))....).)))))))) ( -18.30) >DroYak_CAF1 54007 96 - 1 UAAAAUGCAAAUUUAAAUA--GAAUCGGCAAAGUUUACAUAAAUUCUGGCCGUACAU--UAAAGCCAGCCGAAAAUGUUGCUGGCUAAAACAAUUUGAAU ..........((((((((.--(...((((..(((((....)))))...)))).....--...(((((((..........)))))))....).)))))))) ( -20.70) >consensus UAAAAUGCAAAUUUAAAUA__GAAUCGGCAAAGUUUACAUAAAUUCUGGCCGUACAUUUUAAAGCCAGCCGAAAAUGUUGCUGGCUAAAACAAUUUGAAU ..........((((((((........(((..(((((....)))))...)))...........((((((.(((.....)))))))))......)))))))) (-16.00 = -16.28 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:05 2006