Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,558,302 – 10,558,401 |
Length | 99 |
Max. P | 0.937293 |
Location | 10,558,302 – 10,558,401 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 90.10 |
Mean single sequence MFE | -28.59 |
Consensus MFE | -25.10 |
Energy contribution | -24.94 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.12 |
Mean z-score | -1.66 |
Structure conservation index | 0.88 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10558302 99 + 22407834 CUGAUUAGGAUGGAACGAAACGGAAUGUCGAAGAUAUCGACGGACAGGAGGCGACUUUCUUCGUCCUGAUUGUGCCAUUUUAAUUAAAGCACGGAAUGC .((((((((((((.((((........(((((.....)))))((((.(((((......)))))))))...)))).))))))))))))..(((.....))) ( -29.90) >DroSec_CAF1 45969 99 + 1 CUGAUUAGGAUGUAACGGAACGGAAUGUCGAAGACAUCGACGCACAGGAGGCGACUUUCUUCGUCCUGAUUGUGCCAUUUUAAUUAAAGCACGAAAUGC .(((((((((((..............(((((.....)))))((((((.((((((......))).)))..)))))))))))))))))..(((.....))) ( -27.70) >DroSim_CAF1 45697 99 + 1 CUGAUUAGGAUGGAACGGAACGGAAUGUCGAAGAUAUCGACGCACGGAAGGCGACUUUCUUCGUCCUGAUUGUGCCAUUUUAAUUAAAGCACAGAAUGC ..((((((((((((............(((((.....)))))....(((((....)))))))))))))))))((((.............))))....... ( -29.32) >DroEre_CAF1 46695 94 + 1 CUGAUUAGGACGGAG-----GAGAACGUCGAAGAUAUCGACGCACAGGAGGCGACUUUCUUUGUCCUGAUUGUGCCAUUUUAAUUAAAGCUCGGAAUGU ..(((((((((((((-----((...((((((.....))))))......((....)))))))))))))))))....(((((..(.......)..))))). ( -28.10) >DroYak_CAF1 48171 99 + 1 CUGAUUAGGACGGAACGAAACGGAACGUCGAAGAUAUCGACACACAGGAGGCGACUUUCUUCGUCCUGAUUGUGCCAUUUUAAUUAAAGCACGGAAUAU ..((((((((((((............(((((.....))))).....((((....)))).))))))))))))((((.............))))....... ( -27.92) >consensus CUGAUUAGGAUGGAACGAAACGGAAUGUCGAAGAUAUCGACGCACAGGAGGCGACUUUCUUCGUCCUGAUUGUGCCAUUUUAAUUAAAGCACGGAAUGC ..((((((((((((............(((((.....))))).....((((....)))).))))))))))))((((.............))))....... (-25.10 = -24.94 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:04 2006