Locus 362

Sequence ID 2L_DroMel_CAF1
Location 1,132,849 – 1,132,969
Length 120
Max. P 0.554487
window570

overview

Window 0

Location 1,132,849 – 1,132,969
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.17
Mean single sequence MFE -42.85
Consensus MFE -26.67
Energy contribution -27.87
Covariance contribution 1.20
Combinations/Pair 1.29
Mean z-score -1.84
Structure conservation index 0.62
SVM decision value 0.04
SVM RNA-class probability 0.554487
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1132849 120 - 22407834
AAUGAGCUAACUUUAAUAGGAGUGUGCUCCGGUGAGAGGCAGGAGCUCCAAUUGAAUGGCAGUGGAAUCCUGAGCAUUCAAAGCGACUGUGCCGUGCGCAGUCCAGCUGUCGCCCUCCGU
...((((..(((((....)))))..)))).(((((.((.(((((..((((.(((.....))))))).))))).((.......))((((((((...))))))))...)).)))))...... ( -42.80)
>DroSec_CAF1 19410 120 - 1
AAGGAGCUAACCUUAAUAGGAGUGUGCUCUGGUGAGAGGCAGGAGCUCCAGAUAAAUGGCAGUGGAAUCCUGAGCAUUCAAAGUGACUGUGCCGUGCGCAGUCCAGCUGUCACCCUCCAU
..((((............((((....))))(((((.((.(((((((((((......))).)))....)))))..........(.((((((((...)))))))))..)).))))))))).. ( -42.40)
>DroSim_CAF1 19281 120 - 1
AAGGAGCUAACUCUCAUAGGAGUGUGCUCUGGUGAGAGGCAGGAGCUCCAGAUAAAUGGCAGUGGAAUCCUGAGCAUUCAAAGCGACUGUGCCGUGCGCAGUCCAGCUGUCACCCUCCAU
..((((((..(((((((.((((....)))).))))))).....)))))).......(((((((..........((.......))((((((((...))))))))..)))))))........ ( -48.40)
>DroEre_CAF1 19879 120 - 1
AAGGAGCUAACCUUAACAGGAGUAUGCUCUGGCGAGAGACAGGAGCUCAGAAUAAACGGCAGUGGAAUCCUGAGCAUUCAAAGCGACUGUGUGGUGCGCAGUCCAACUGUCACCCUCCAA
..((((.....(((..(((.((....)))))..))).(((((..((((((.((..((....))...)).)))))).......(.(((((((.....))))))))..)))))...)))).. ( -40.80)
>DroYak_CAF1 20242 120 - 1
AAGGAGCUGACAUUAACAGGCGUGUGCUCUGGUGAGAGACAGGAGCUCAGGAUAAACGGCAGUGGAAUCCUGAGCAUUCGAAGCGACUGUGUCGUGCGCAGUCCGGCUGUCAACCUUCAA
..(((((..((((........)))))))))(((....(((((..(((((((((..((....))...))))))))).......(.(((((((.....))))))))..))))).)))..... ( -44.60)
>DroPer_CAF1 20777 120 - 1
AAGGAGGUCUCGAUUAUGGGUGUUUGUUCGGAUGAGCGGCAGCAGCUACGGAUCAACGGCAGCGGUAUCUUAACUAUUCGGAGCGACUGCAUCGUGCGAAGUACAUUUGUGACACUCCAA
..(((((((......((..((((...((((.((((((((..((.(((.((......))..)))(((......))).......))..)))).)))).))))..))))..))))).)))).. ( -38.10)
>consensus
AAGGAGCUAACCUUAAUAGGAGUGUGCUCUGGUGAGAGGCAGGAGCUCCAGAUAAACGGCAGUGGAAUCCUGAGCAUUCAAAGCGACUGUGCCGUGCGCAGUCCAGCUGUCACCCUCCAA
..((((............((((....))))(((((.((.(((((((((((......))).)))....)))))..........(.((((((((...)))))))))..)).))))))))).. (-26.67 = -27.87 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:56 2006