Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,546,418 – 10,546,530 |
Length | 112 |
Max. P | 0.704363 |
Location | 10,546,418 – 10,546,530 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 81.70 |
Mean single sequence MFE | -17.46 |
Consensus MFE | -10.53 |
Energy contribution | -9.90 |
Covariance contribution | -0.62 |
Combinations/Pair | 1.17 |
Mean z-score | -2.02 |
Structure conservation index | 0.60 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10546418 112 + 22407834 AAAUUAAUUUGUUAAAUGCACAAUAUGCUCGAAUCCUUCAGUCAAUAUUGCAGACCAUUCUACUAACAGCCAGACAAAUACAAAUAUUUGUUUAAUUUAUUGGUAAACAAAG .......((((((...((((..(((((((.((.....)))))..))))))))........((((((.....(((((((((....)))))))))......)))))))))))). ( -15.90) >DroSec_CAF1 34453 112 + 1 AAAUUAAUUGGUUAAAUGCACAAUAUGCUCGAAUCCUUCAACCAAUAUGGCAUACCAUUCUACUAAGAGCCAGACAAAUACAAAUAUUUGUUUAAUUUAUUGGUAAACAAAG .........((......(((.....)))......))....(((((((.(((.................)))(((((((((....)))))))))....)))))))........ ( -18.53) >DroSim_CAF1 34139 112 + 1 AAAUUAAUUUGUUAAAUGCACAAUAUGCUCGAAUCCUUCAGCCAAUAUUGCAUACCAUUCUACUAAGAGCCAGACAAAUACAAAUAUUUGUUUAAUUUAUUGGUAAACAAAG .......((((((...((((......(((.((.....)))))......))))(((((((((....))))..(((((((((....))))))))).......))))))))))). ( -19.90) >DroEre_CAF1 35075 88 + 1 GAAUUAAUUAAAUAA------------------------AACCAAUAUAGCAGGCCACUUCACUACGAGCCAAACAAAUACAAAUAUUUGUUUAAUUUAUUGGUAAACAAAG ...............------------------------.(((((((.....((((..........).)))(((((((((....)))))))))....)))))))........ ( -15.50) >consensus AAAUUAAUUUGUUAAAUGCACAAUAUGCUCGAAUCCUUCAACCAAUAUUGCAGACCAUUCUACUAAGAGCCAGACAAAUACAAAUAUUUGUUUAAUUUAUUGGUAAACAAAG ........................................(((((((..((.................)).(((((((((....)))))))))....)))))))........ (-10.53 = -9.90 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:58 2006