Locus 3616

Sequence ID 2L_DroMel_CAF1
Location 10,545,600 – 10,545,703
Length 103
Max. P 0.500000
window5708

overview

Window 8

Location 10,545,600 – 10,545,703
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 87.83
Mean single sequence MFE -46.02
Consensus MFE -35.67
Energy contribution -36.87
Covariance contribution 1.20
Combinations/Pair 1.13
Mean z-score -2.19
Structure conservation index 0.78
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10545600 103 + 22407834
AGGCGGUGCCGGCGGCGGAGCAGCUGCUCCAGUCACAAAUCCCAAUGGACCCGGCACACGGCACAGCUCGCACAGCUCCGCUGCCAGCACGGCCAGCUCGAAU
.(((.((((.((((((((((((((((.((((..............)))).(((.....)))..)))))......))))))))))).)))).)))......... ( -50.94)
>DroSec_CAF1 33656 103 + 1
AGGCGGUGCCGGCGGAGGAGCAGCUGCUCCAGGCACAAAUCCCAAUGGACCCGGCACACGGCACAGCUCGCACAGCUCCGCUGCCAGCACAGCUAGUUCGAAU
.(((.((((.(((((.((((((((((.((((((........))..)))).(((.....)))..)))))......))))).))))).)))).)))......... ( -41.70)
>DroSim_CAF1 33367 103 + 1
AGGCGGUGCCGGCGGAGGAGCAGCUGCUCCAGGCACAAAUCCCAAUGGACCCGGCACACGGCACAGCUCGCACAGCUCCGCUGCCAGCACAGCUAGUUCGAAU
.(((.((((.(((((.((((((((((.((((((........))..)))).(((.....)))..)))))......))))).))))).)))).)))......... ( -41.70)
>DroEre_CAF1 34253 103 + 1
GGGCGGUGCCGGCGGAGGAGCAGCUGCUCCAGGCACAAAUCCCAAUGGACCCGGCACGCGGCACAGCUCCCACAGCUCCGCUGCCAGCACGGCCAGCUCGAAC
.(((.((((.(((((.(((((.(((((.((.((..((........))..)).))...)))))...(......).))))).))))).)))).)))......... ( -46.80)
>DroYak_CAF1 35353 103 + 1
AGGCGGUGCCGGCGGAGGAGCAGCUGCUCCGGGCACAAAUCCCAAUGGACCCGGCACGCGGCACAGCUCCCAUAGCUCCGCUGCCAGCACGGCUAGCUCGAAU
.(((.((((.(((((.(((((.(((((.(((((..((........))..)))))...)))))...(....)...))))).))))).)))).)))......... ( -49.90)
>DroAna_CAF1 38741 100 + 1
UGGCGGUGCAGCCGGGGGAACCACA---UCUGGGGCUAAUCCCGGUGGUCCCGGCACCCGUCACAGCUCCCACAGCUCCGCGGCUAGCACAGCCAGCUCCAAU
((((.((((.((((((...(((((.---...((((....)))).)))))))))))..((((...((((.....))))..))))...)))).))))........ ( -45.10)
>consensus
AGGCGGUGCCGGCGGAGGAGCAGCUGCUCCAGGCACAAAUCCCAAUGGACCCGGCACACGGCACAGCUCCCACAGCUCCGCUGCCAGCACAGCCAGCUCGAAU
.(((.((((.(((((.((((((((((.((((((........))..)))).(((.....)))..)))))......))))).))))).)))).)))......... (-35.67 = -36.87 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:57 2006