Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,541,232 – 10,541,331 |
Length | 99 |
Max. P | 0.841654 |
Location | 10,541,232 – 10,541,331 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 80.54 |
Mean single sequence MFE | -23.82 |
Consensus MFE | -19.05 |
Energy contribution | -19.05 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.80 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.841654 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10541232 99 + 22407834 GCAAUUACAAUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAGCAUGGUACACAAUAUUAGCAGUCUGACCACC------------ACCCAGCAAAC ((.........(((((.....((((((......)))))).......)))))(((((...((.....))...)))))............------------.....)).... ( -22.20) >DroVir_CAF1 40226 95 + 1 GCAAUUACAGUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAACUUGCGGCCCAAUAUUAGCAGACG-UCC---------------GCCUAGCAAAC ((......((((((((.....((((((......)))))).......))))))))......((((.(..............)-.))---------------))...)).... ( -24.24) >DroGri_CAF1 36559 92 + 1 GCAAUUACAGUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAACUUGCAGCCCAAUAUUAGCAGAUG-UCC---------------GCCUAU---AC ((((....((((((((.....((((((......)))))).......))))))))....)))).((...(((((....))))-)..---------------))....---.. ( -23.30) >DroEre_CAF1 29782 97 + 1 GCAAUUACAAUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAGCAUGGUACACAAUAUUAGCAGUCUGACCACC--------C--CACGC---AAG- ((.........(((((.....((((((......)))))).......)))))(((((...((.....))...)))))............--------.--...))---...- ( -22.30) >DroYak_CAF1 30711 102 + 1 GCAAUUACAAUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAGCAUGGUACACAAUAUUAGCAGUCUGCCCACC--------CAGCACCCAGCACC- ((.........(((((.....((((((......)))))).......)))))(((((...((.....))...))))).(..(((.....--------..)))..).))...- ( -23.70) >DroPer_CAF1 30666 107 + 1 GCAAUUACAAUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAGCGUGGUACACAAUAUUAGCAGCCAGGACUGGACUUGUGG----CCCCAGAGAGU ...........(((((.....((((((......)))))).......)))))(((((...((.....))...))))).((((.((......)).)))----).......... ( -27.20) >consensus GCAAUUACAAUGCCUCAAACUGUUGCAACUUCCUGCAAUGACAACAGAGGCGCUAAGCAUGGUACACAAUAUUAGCAGUCUGACCACC____________ACCCAGCAAAC ...........(((((.....((((((......)))))).......)))))(((((...((.....))...)))))................................... (-19.05 = -19.05 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:55 2006