Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,537,866 – 10,537,964 |
Length | 98 |
Max. P | 0.800936 |
Location | 10,537,866 – 10,537,964 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 93.79 |
Mean single sequence MFE | -36.84 |
Consensus MFE | -32.24 |
Energy contribution | -32.08 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.37 |
Structure conservation index | 0.88 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.800936 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10537866 98 - 22407834 GUCCAGCAGUUGGUGGCGACACACGGGCGGAGUCCGCAGACGGACAUGCCCAUGGAGACGGGACAUGCCAAGCAGCCGGGCACGAAGAACAAUGCAAC ((((.((.((...(((((......(((((..(((((....))))).))))).((....)).....))))).)).)).))))................. ( -35.80) >DroSec_CAF1 26080 93 - 1 GUCCAGCAGUUGGUGGCGACACACGGGCGGAGUCCGCAGACGGACAUGCCCAUGGAGACGGGACAUG-----CAGCCGGGCACGGAGAACAAUGCAUC ((((........(((....)))..(((((..(((((....))))).))))).((....))))))(((-----((.(((....))).......))))). ( -37.10) >DroSim_CAF1 25460 93 - 1 GUCCAGCAGUUGGUGGCGACACACGGGCGGAGUCCGCAGACGGACAUGCCCAUGGAGACGGGACAUG-----CAGCCGGGCACGGAGAACAAUGCAUC ((((........(((....)))..(((((..(((((....))))).))))).((....))))))(((-----((.(((....))).......))))). ( -37.10) >DroEre_CAF1 26550 93 - 1 GUCCAGCAGUCGGUGGCGACACACGGGCGGAGUCCGCAGACGGACAUGCCCAUGGAGACGGGACAUG-----CAGCCGGGCGAGGAGAACAAUGCACC ((((....(((.(((....)))..(((((..(((((....))))).))))).....))).)))).((-----((...(..(.....)..)..)))).. ( -36.60) >DroYak_CAF1 25778 93 - 1 GUCCAGCAGUCGGUGGCGACACACGGGCGGAGUCCGCAGACGGACAUGCCCAUGGAGACGGGACAUG-----AAGUCGGGCAUGAAGAACAAUGCACC ((((....(((.(((....)))..(((((..(((((....))))).))))).....))).))))...-----.....((((((........)))).)) ( -37.60) >consensus GUCCAGCAGUUGGUGGCGACACACGGGCGGAGUCCGCAGACGGACAUGCCCAUGGAGACGGGACAUG_____CAGCCGGGCACGGAGAACAAUGCACC ((((.((.....(((....)))..(((((..(((((....))))).))))).((....))..............)).))))................. (-32.24 = -32.08 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:54 2006