Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,527,189 – 10,527,290 |
Length | 101 |
Max. P | 0.998991 |
Location | 10,527,189 – 10,527,290 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 94.65 |
Mean single sequence MFE | -25.02 |
Consensus MFE | -22.03 |
Energy contribution | -21.73 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.21 |
Mean z-score | -2.08 |
Structure conservation index | 0.88 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10527189 101 + 22407834 CGAUAAUAACAUGCAUAAAUUUAUACAUUUAUGCUCAGCAGUCCAUUUAAUGAACUGCGCAUUGUUCGCUCUGAUUUGCAUAGCAAGUAAGUGCGUAGCUG ............((((((((......))))))))...(((((.(((...))).))))).....((((((.((.((((((...)))))).)).))).))).. ( -26.40) >DroSec_CAF1 15540 101 + 1 CGAUAAUAACAUGCAUAAAUUUAUACAUUUAUGUUCAGCAGCCCAUUUAAUGAACUGCGCAUUGUUCGCUCUGAUUUGCAUAGCAAGUAAGUGCGUAGCUG ............((((((((......)))))))).((((.((.((((((..((((........))))(((.((.....)).)))...)))))).)).)))) ( -22.40) >DroSim_CAF1 15328 101 + 1 CGAUAAUAACAUGCAUAAAUUUAUACAUUUAUGCUCAGCAGCCCAUUUAAUGAACUGCGCAUUGUUCGCUCUGAUUUGCAUAGCAAGUAAGUGCGUAGCUG ............((((((((......)))))))).((((.((.((((((..((((........))))(((.((.....)).)))...)))))).)).)))) ( -24.70) >DroEre_CAF1 16015 101 + 1 CGAUAAUAACAUGCAUAAAUUUAUACAUUUAUGCUCAGCAGCCCAUUUAAUGAACUGCGCAUUGUUCGCUCUGAUUUGCAUAGCAAGUAACUGCGUAGCUG ............((((((((......)))))))).((((.((.........((((........))))((....((((((...))))))....)))).)))) ( -22.80) >DroYak_CAF1 16011 101 + 1 CGAUAAUAACAUGCAUAAAUUUAUACAUUUAUGCUCGGCAGCUCAUUUAAUGAACUGCGCAUUGUUCGCUCUGAUUUGCAUAGCAAGUAAGUGCGUAGCUG ............((((((((......))))))))...((((.((((...)))).)))).....((((((.((.((((((...)))))).)).))).))).. ( -26.40) >DroAna_CAF1 15752 101 + 1 CGAUAACAACAUGCAUAAAUUUAUAUAUUUAUGCUCAACAGCUCAUUUAAUGAACUGCACAUUGUUUGUGCUGUUUUGCAUAGCAAGUAUCUGCGUAGUUG ......((((.(((...............(((((..((((((.((..(((((.......)))))..)).))))))..)))))(((......)))))))))) ( -27.40) >consensus CGAUAAUAACAUGCAUAAAUUUAUACAUUUAUGCUCAGCAGCCCAUUUAAUGAACUGCGCAUUGUUCGCUCUGAUUUGCAUAGCAAGUAAGUGCGUAGCUG ............((((((((......)))))))).((((.((.((((((..((((........))))(((.((.....)).)))...)))))).)).)))) (-22.03 = -21.73 + -0.30)
Location | 10,527,189 – 10,527,290 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 94.65 |
Mean single sequence MFE | -27.07 |
Consensus MFE | -24.28 |
Energy contribution | -24.28 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.11 |
Mean z-score | -2.82 |
Structure conservation index | 0.90 |
SVM decision value | 3.32 |
SVM RNA-class probability | 0.998991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10527189 101 - 22407834 CAGCUACGCACUUACUUGCUAUGCAAAUCAGAGCGAACAAUGCGCAGUUCAUUAAAUGGACUGCUGAGCAUAAAUGUAUAAAUUUAUGCAUGUUAUUAUCG ......(((.((.(.((((...)))).).)).)))((((....(((((((((...)))))))))...((((((((......)))))))).))))....... ( -28.00) >DroSec_CAF1 15540 101 - 1 CAGCUACGCACUUACUUGCUAUGCAAAUCAGAGCGAACAAUGCGCAGUUCAUUAAAUGGGCUGCUGAACAUAAAUGUAUAAAUUUAUGCAUGUUAUUAUCG ......(((.((.(.((((...)))).).)).)))((((.((((((((((((...))))))))).....((((((......)))))))))))))....... ( -24.50) >DroSim_CAF1 15328 101 - 1 CAGCUACGCACUUACUUGCUAUGCAAAUCAGAGCGAACAAUGCGCAGUUCAUUAAAUGGGCUGCUGAGCAUAAAUGUAUAAAUUUAUGCAUGUUAUUAUCG ......(((.((.(.((((...)))).).)).)))((((....(((((((((...)))))))))...((((((((......)))))))).))))....... ( -27.50) >DroEre_CAF1 16015 101 - 1 CAGCUACGCAGUUACUUGCUAUGCAAAUCAGAGCGAACAAUGCGCAGUUCAUUAAAUGGGCUGCUGAGCAUAAAUGUAUAAAUUUAUGCAUGUUAUUAUCG ..((...((((....))))...))......((...((((....(((((((((...)))))))))...((((((((......)))))))).))))....)). ( -27.70) >DroYak_CAF1 16011 101 - 1 CAGCUACGCACUUACUUGCUAUGCAAAUCAGAGCGAACAAUGCGCAGUUCAUUAAAUGAGCUGCCGAGCAUAAAUGUAUAAAUUUAUGCAUGUUAUUAUCG ......(((.((.(.((((...)))).).)).)))((((.((.(((((((((...))))))))))).((((((((......)))))))).))))....... ( -28.50) >DroAna_CAF1 15752 101 - 1 CAACUACGCAGAUACUUGCUAUGCAAAACAGCACAAACAAUGUGCAGUUCAUUAAAUGAGCUGUUGAGCAUAAAUAUAUAAAUUUAUGCAUGUUGUUAUCG .......((((....))))..(((......)))..(((((((((((((((((...)))))))))...((((((((......)))))))))))))))).... ( -26.20) >consensus CAGCUACGCACUUACUUGCUAUGCAAAUCAGAGCGAACAAUGCGCAGUUCAUUAAAUGGGCUGCUGAGCAUAAAUGUAUAAAUUUAUGCAUGUUAUUAUCG ..((...(((......)))...))......((...((((....(((((((((...)))))))))...((((((((......)))))))).))))....)). (-24.28 = -24.28 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:53 2006