Locus 3609

Sequence ID 2L_DroMel_CAF1
Location 10,522,986 – 10,523,078
Length 92
Max. P 0.992388
window5699

overview

Window 9

Location 10,522,986 – 10,523,078
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 86.04
Mean single sequence MFE -26.96
Consensus MFE -21.02
Energy contribution -20.90
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -2.88
Structure conservation index 0.78
SVM decision value 2.33
SVM RNA-class probability 0.992388
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10522986 92 + 22407834
GCCGAAUGUAUCUCGCAGAUACUGUAUCGCACAGAUACCGCAUCAUCUGUAGCUGGGCGCUUUGGCAUUUGGCGUUUGGCAAACGAUUUUAU
(((((((.......((((((.(.(((((.....))))).)....)))))).((..((.((....)).))..)))))))))............ ( -27.00)
>DroSec_CAF1 11219 75 + 1
GCCGAAUGUAUCUCGCAGAUACUGUAUCGCACAGAUACCGCA---UCUGUAGCU--------------UUGGCAUUUGGCAAACGAUUUUAU
(((((((((..((.((((((.(.(((((.....))))).).)---)))))))..--------------...)))))))))............ ( -26.00)
>DroSim_CAF1 11309 75 + 1
GCCGAAUGUAUCUCGCAGAUACUGUAUCGCACAGAUACCGCA---UCUGUAGCU--------------UUGGCAUUUGGCAAACGAUUUUAU
(((((((((..((.((((((.(.(((((.....))))).).)---)))))))..--------------...)))))))))............ ( -26.00)
>DroEre_CAF1 11711 89 + 1
GCCGAAUGUAUCUCGCAGAUACUGUGUCUCACAGAUACCGCA---UCUGUAUCUGAGCGCUUUGGCAUUUGGCAUUUGGCAAACGAUUUUAU
(((((((((..(((((((((.(.(((((.....))))).).)---)))))....))).((....)).....)))))))))............ ( -28.00)
>DroYak_CAF1 11744 89 + 1
GCCGAAUGUAUCUCGCAGAUACUGUAUCUCACAGAUACCGCA---UCUGUAUCUGGGCGCUUUGGCAAUCGGCAUUUGGCAAACGAUUUUAU
(((((((((.....((((((.(.(((((.....))))).).)---)))))...(((..((....))..))))))))))))............ ( -27.80)
>consensus
GCCGAAUGUAUCUCGCAGAUACUGUAUCGCACAGAUACCGCA___UCUGUAGCUG_GCGCUUUGGCA_UUGGCAUUUGGCAAACGAUUUUAU
(((((((((.....(((((..(.(((((.....))))).).....)))))........((....)).....)))))))))............ (-21.02 = -20.90 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:48 2006