Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,514,356 – 10,514,466 |
Length | 110 |
Max. P | 0.996621 |
Location | 10,514,356 – 10,514,466 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 63.64 |
Mean single sequence MFE | -18.81 |
Consensus MFE | -8.91 |
Energy contribution | -9.13 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.10 |
Mean z-score | -2.48 |
Structure conservation index | 0.47 |
SVM decision value | 2.72 |
SVM RNA-class probability | 0.996621 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10514356 110 - 22407834 -AUUA---------AUACCGUGUAACAACUUGAAGGCAUCUAUCUUUAUAAGAAAUACACAUGAUUACAAAAAAAUCAAAUUUCUAAACUCACAUUUGUCAAUACAAGUGCAAUUUAUUU -....---------.....(((((......((((((......)))))).......))))).(((((.......)))))..............(((((((....))))))).......... ( -13.62) >DroEre_CAF1 2678 102 - 1 UAUAAAUACGGUGUGUGCUAAU-----------------GUAUCUGUAUAACAAAUACACACGCUUACAACAAAAUCAAAUCUCUUAGCUCGCAUUUGUUCAGACAAGUGCGAU-UAUUU .........((((((((....(-----------------((.........)))....))))))))........................((((((((((....)))))))))).-..... ( -22.50) >DroYak_CAF1 2745 98 - 1 UAUUA--ACUGUGUAUGCUGUUC----------------AUAUCUAUAUAGCAAACAUACAUCAUUACAAAUAAAUCGAAUUUCUUAACUCGUAUUUGUUAAUACAAGUACGAU-UA--- .....--..(((((.((((((..----------------........)))))).)))))..............................((((((((((....)))))))))).-..--- ( -20.30) >consensus UAUUA__AC_GUGUAUGCUGUU_________________AUAUCUAUAUAACAAAUACACAUGAUUACAAAAAAAUCAAAUUUCUUAACUCGCAUUUGUUAAUACAAGUGCGAU_UAUUU .........................................................................................((((((((((....))))))))))....... ( -8.91 = -9.13 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:44 2006