Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,491,944 – 10,492,036 |
Length | 92 |
Max. P | 0.542677 |
Location | 10,491,944 – 10,492,036 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 89.40 |
Mean single sequence MFE | -19.88 |
Consensus MFE | -18.06 |
Energy contribution | -17.78 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -1.19 |
Structure conservation index | 0.91 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10491944 92 - 22407834 ACCUCCGCCGGUUGAGCUGGCCGAC---GAAAAGAACGAAAAGUAUUAAAUGUACUUUGUGCAUUUCUUCA-----AAUAUGAUUCACAGCACACA---AGAA .(.((.(((((.....))))).)).---)..........(((((((.....)))))))((((......(((-----....)))......))))...---.... ( -19.70) >DroSec_CAF1 3319 92 - 1 ACCUCCGCCGGUUGAGCUGGCCGAC---GAAAACAACGAAAAGUAUUAAAUGUACUUUGUGCAUUUCUUCA-----AAUAUGAUUCACAGCACACA---AGAA .(.((.(((((.....))))).)).---)..........(((((((.....)))))))((((......(((-----....)))......))))...---.... ( -19.70) >DroSim_CAF1 2851 92 - 1 ACCUCCGCCGGUUGAGCUGGCCGAC---GAAAAUAACGAAAAGUAUUAAAUGUACUUUGUGCAUUUCUUCA-----AAUAUGAUUCACAGCACACA---AGAA .(.((.(((((.....))))).)).---)..........(((((((.....)))))))((((......(((-----....)))......))))...---.... ( -19.70) >DroEre_CAF1 2980 91 - 1 UCCUCCGCCGGUUGAGCUGGCCGAC----AAGAUAACGAAAAGUAUUAAAUGUACUUUGUGCAUUUCUUCA-----AAUAUGAUUCACAGCACACA---CAAC ...((.(((((.....))))).)).----..........(((((((.....)))))))((((......(((-----....)))......))))...---.... ( -19.30) >DroYak_CAF1 2890 91 - 1 ACCUCCGCCGGUUGAGCUGGCCGAC----AAGAUAACGAAAAGUAUUAAAUGUACUUUGUGCAUUUCUUCA-----AAUAUGAUUCACAGCACACA---CGAA ...((.(((((.....))))).)).----.......((.(((((((.....)))))))((((......(((-----....)))......))))...---)).. ( -20.30) >DroAna_CAF1 3642 103 - 1 ACCUCCGCCGGUUGAUCUGGCAGGCAGAGAACACAACAAAAAGUAUUAUAUGUACUUUGUGCAUUUGUUCGACUAUAAUAUGAUUCACAGCACACGACGACAA ..(((((((((.....))))).)).)).(((((...((.(((((((.....))))))).))....)))))................................. ( -20.60) >consensus ACCUCCGCCGGUUGAGCUGGCCGAC___GAAAAUAACGAAAAGUAUUAAAUGUACUUUGUGCAUUUCUUCA_____AAUAUGAUUCACAGCACACA___AGAA ...((.(((((.....))))).))...............(((((((.....)))))))((((......(((.........)))......)))).......... (-18.06 = -17.78 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:42 2006