Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,482,669 – 10,482,789 |
Length | 120 |
Max. P | 0.641523 |
Location | 10,482,669 – 10,482,789 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.58 |
Mean single sequence MFE | -33.00 |
Consensus MFE | -26.40 |
Energy contribution | -26.24 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.19 |
Mean z-score | -1.48 |
Structure conservation index | 0.80 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641523 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10482669 120 - 22407834 GACCUUGUAUUUCCAUGCAUGCAAGUACAUUAUGAGAUCCUUUGUGCCGGGGUCUCUGUAGUUUAUCUUGCAUUCAGAACAUUGCGGAUCCGAAGUUGUCUUCUUGGAAUCAAAGGACCU ..((((....(((((((.(((((((((.(((((((((((((.......)))))))).))))).)).))))))).))...............((((....)))).)))))...)))).... ( -35.80) >DroSec_CAF1 10724 120 - 1 GACCUUAUAUUUCCAUGCAUGCAAGUACAUUAUGAGAUCCUUUGUGCCAGGGUCUCUGUAGUUUAACUUGCAUUCAGAACAUUGCGGAUCCGAAGUUGCCUUCUUGGAAUCAAAAGACCU ...(((....(((((((.((((((((..(((((((((((((.......)))))))).)))))...)))))))).))...............((((....)))).)))))....))).... ( -31.60) >DroSim_CAF1 11062 120 - 1 GACCUUGUAUUUCCAUGCAUGCAAGUACAUUAUGAGAUCCUUUGUGCCAGGGUCUCUGUAGUUUAACUUGCAUUCAGAACAUUGUGGAUCGGAAGUUGCCUUCUUGGAAUCAAAAGACCU ...(((....(((((((.((((((((..(((((((((((((.......)))))))).)))))...)))))))).)).........((..(....)...))....)))))....))).... ( -34.00) >DroEre_CAF1 14875 120 - 1 UACCUUGUAUUUCCAUGCGUGCAAGUACAUUAUGAGGUCCUUUGUGCCGGGAUCUCGGUAGUUUAUCUUGCAUUCAGAACAUUGAGGGUCCGAAGUUGUCUUUUUUGGAUCAAAGGACCU ..((((.........((.(((((((((.(((((((((((((.......)))))))).))))).)).))))))).))..........(((((((((.......))))))))).)))).... ( -36.80) >DroYak_CAF1 11514 120 - 1 AACCCUGUAUUUCCAAGCAUGCAAGUACAUGAUGAGAUCCUUUGUGCCGGGGUCCCUGUAGUUUAUCUUGCAUUCAGAACAUUGUGGGUCCGAAGUUGUCUUUUUUGGAUCGAAUGAUCU ................(.(((((((((.((...(.((((((.......)))))).)....)).)).))))))).)(((.((((...(((((((((.......))))))))).)))).))) ( -26.80) >consensus GACCUUGUAUUUCCAUGCAUGCAAGUACAUUAUGAGAUCCUUUGUGCCGGGGUCUCUGUAGUUUAUCUUGCAUUCAGAACAUUGCGGAUCCGAAGUUGUCUUCUUGGAAUCAAAAGACCU ...(((....(((((((.(((((((((.(((((((((((((.......)))))))).))))).)).))))))).))...............((((....)))).)))))....))).... (-26.40 = -26.24 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:41 2006