Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,481,537 – 10,481,775 |
Length | 238 |
Max. P | 0.824337 |
Location | 10,481,537 – 10,481,657 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.00 |
Mean single sequence MFE | -29.20 |
Consensus MFE | -27.20 |
Energy contribution | -27.24 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.29 |
Structure conservation index | 0.93 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778601 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10481537 120 + 22407834 GCACAAUGAUCUGCUGGCCAAUGUGGUGCAUAGGUAAGCAUCAGCAGGAAAUCUCAUUUGAAUAUGCACACAUUUGCAUUCUAGACACGAAGUCCCUGUUACUUCACAGCCCAUCAAGAU ......((((..((((((.((((((.((((((..(((((....))..((....))..)))..)))))))))))).))...........(((((.......))))).))))..)))).... ( -31.10) >DroSec_CAF1 9615 120 + 1 GCACAAUGAUCUGCUGGCCAAUGUGGUGCAUAGGUAAGCAUCAGUAGGAAAUCUCAUUUGAAUAUGCACACAUUUGCAUUCUAGACACGAAGUCCCUGUUACUUCACAGCCCAUCAAGAU ......((((..((((((.((((((.((((((.(....).((((...((....))..)))).)))))))))))).))...........(((((.......))))).))))..)))).... ( -29.50) >DroSim_CAF1 9951 120 + 1 GCACAAUGAUCUGCUGGCCAAUGUGGUGCAUAGGUAAGCAUCAGUAGGAAAUCUCAUUUGAAUAUGCACACAUUUGCAUUCUAGACACGAAGUCCCUGUUACUUCACAGCCCAUCAAGAU ......((((..((((((.((((((.((((((.(....).((((...((....))..)))).)))))))))))).))...........(((((.......))))).))))..)))).... ( -29.50) >DroEre_CAF1 13762 120 + 1 ACAUAACGAUCUGCUGGCCAAUGUGGUUCAUAGGUAAGCAUCAGUAGGAAACCUCAUUUGAAUAUGCACACAUUUGCAUUCUAGACACGAAGUCCCUGUUACUUCACAGCCCAUCAAGAU .......(((..((((((.((((((...((((..((((.....(..(....)..).))))..))))..)))))).))...........(((((.......))))).))))..)))..... ( -25.10) >DroYak_CAF1 10375 120 + 1 ACAUAACGAUCUGCUGGCCAAUGUGGUGCAUAGGUAAGCAUCAGUAGGAAACAUCAUUUGAAUAUGCACACAUUUGCAUUCUAGACACGAAGUCCCUGUUACUUCACAGCCCAUCAAGAU .......(((..((((((.((((((.((((((..(((((....)).(....).....)))..)))))))))))).))...........(((((.......))))).))))..)))..... ( -30.80) >consensus GCACAAUGAUCUGCUGGCCAAUGUGGUGCAUAGGUAAGCAUCAGUAGGAAAUCUCAUUUGAAUAUGCACACAUUUGCAUUCUAGACACGAAGUCCCUGUUACUUCACAGCCCAUCAAGAU .......(((..((((((.((((((.((((((..(((((....))..((....))..)))..)))))))))))).))...........(((((.......))))).))))..)))..... (-27.20 = -27.24 + 0.04)
Location | 10,481,657 – 10,481,775 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.74 |
Mean single sequence MFE | -24.55 |
Consensus MFE | -15.70 |
Energy contribution | -15.30 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.12 |
Mean z-score | -2.42 |
Structure conservation index | 0.64 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10481657 118 - 22407834 CACAAGGAUGUACCUACA--ACAUACGAUUGUUAUUAAAUCAAAUUCCUUCCAAAUUAGUAUACCUACCGGUAUCGAUGCCGGCUUAUUCACAACCACAAUAUCCUUGUCCAUGUACACA .((((((((((.......--..((((((((.......)))).((((.......)))).)))).....((((((....))))))................))))))))))........... ( -22.40) >DroSec_CAF1 9735 118 - 1 CACAAGGAUGUACCUACA--ACAUACGAUUGUUAUUGAACAAAAUUCCUUCUGAAUUAGUAUACCUACGGGUAUCGAUGCCGGCUUAUUCACAACCACAAUAUCCUUGUCCAUGUAUACA .((((((((((.......--........(((((....))))).........(((((.((((((((....)))))((....))))).)))))........))))))))))........... ( -25.50) >DroSim_CAF1 10071 120 - 1 CACAAGGAUGUACCUACAAAACAUACGAUUGUUAUUAUAUAAAAUUCCAUGUAAAUUAGUAUACCUACCGGUAUCGAUGCCGGCUUAUUAACAACCACAAUAUCCUUGUCCAUGAAAACA .((((((((((...(((..((((......)))).((((((........))))))....)))......((((((....))))))................))))))))))........... ( -23.80) >DroEre_CAF1 13882 119 - 1 CACAAGGGUGUACCUGAA-AAGAUACGAUUGUUAUUAUAUUCGCUAGCACUCAAAUUACUAUACCCACUGGUAUCGAUGCUGGCUUAUUCACAACCACAAUAUCCUUGUCCAUGUACACU .(((((((((((.((...-.)).))).(((((......((..(((((((.((....(((((.......)))))..)))))))))..))........)))))))))))))........... ( -26.74) >DroYak_CAF1 10495 119 - 1 CACAAGGGUGUACCUGAA-AUAGUACGAUUAUUAUUAUAUUCUUUGGCGUUUAAAUGAGUAUACUUACAGGUAUCGAUGCUGGCUUAUUCACAACCACAAUAUCCUUGUCCAUGUACACA .(((((((((((((((.(-((((((....)))))))((((((.((........)).)))))).....))))).....((.(((...........)))))))))))))))........... ( -24.30) >consensus CACAAGGAUGUACCUACA_AACAUACGAUUGUUAUUAUAUAAAAUUCCAUCUAAAUUAGUAUACCUACCGGUAUCGAUGCCGGCUUAUUCACAACCACAAUAUCCUUGUCCAUGUACACA .((((((((((.................................................(((((....))))).......((...........))...))))))))))........... (-15.70 = -15.30 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:40 2006