| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,479,266 – 10,479,376 |
| Length | 110 |
| Max. P | 0.896780 |
| Location | 10,479,266 – 10,479,376 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.25 |
| Mean single sequence MFE | -32.68 |
| Consensus MFE | -30.34 |
| Energy contribution | -30.22 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.896780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10479266 110 - 22407834 UCCGCGGCGGUUUUCGUAAUGCGUGUUUACAUGGUAUUGUAAGAAUUAUAAAAACGACUGGCCCAAAAGGCGCAUCGCGGAAACAAUGAGGACCGCACUUAGGAUACCCA---------- (((...((((((((((..((((((.(((....(((.((((.............))))...)))..))).))))))..)(....)...))))))))).....)))......---------- ( -34.62) >DroSec_CAF1 7583 110 - 1 ACCGCGGCGGUUUUCGUAAUGUGUGUUUACAUGGUAUUGUAAGAAUUAUAAAAACGACUGGCCCAAAAGGCGCAUCGCGGAAACAAUGAGGACCGCACUUAGGAUACCCA---------- .((...((((((((((..((((((.(((....(((.((((.............))))...)))..))).))))))..)(....)...))))))))).....)).......---------- ( -31.82) >DroSim_CAF1 7858 110 - 1 UCCGCGGCGGUUUUCGUAAUGUGUGUUUACAUGGUAUUGUAAGAAUUAUAAAAACGACUGGCCCAAAAGGCGCAUCGCGGAAACAAUGAGGACCGCACUUAGGAUACCCA---------- (((...((((((((((..((((((.(((....(((.((((.............))))...)))..))).))))))..)(....)...))))))))).....)))......---------- ( -32.72) >DroEre_CAF1 10842 115 - 1 UCCGCGGCGGUUUCCGUAAUGUGUGUUUACAUGGUAUUGUAAGAAUUAUAAAAACGACUGGCCCAAAAGGCGCAUCGCGGAAACAAUGAGGACCGCACUUAGGAUACCCA----CCC-UG ...(((((.(((((((..((((((.(((....(((.((((.............))))...)))..))).))))))..)))))))......).))))...((((.......----.))-)) ( -32.22) >DroYak_CAF1 8422 120 - 1 GCAGCGGUGGUUUUCGUAAUGUGUGUUUACAUGGUAUUGUAAGAAUUAUAAAAACGACUGGCCCAAAAGGCGCAUCGCGGAAACAAUGAGGACCGCACUUAGGAUACCCGGAUACCCAUA ......(.(((.((((..(((((....)))))((((((.((((............((.(((((.....))).))))((((...(.....)..)))).)))).)))))))))).))))... ( -32.00) >consensus UCCGCGGCGGUUUUCGUAAUGUGUGUUUACAUGGUAUUGUAAGAAUUAUAAAAACGACUGGCCCAAAAGGCGCAUCGCGGAAACAAUGAGGACCGCACUUAGGAUACCCA__________ ......((((((((((..((((((.(((....(((.((((.............))))...)))..))).))))))..)(....)...))))))))).....((....))........... (-30.34 = -30.22 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:35 2006