Locus 3599

Sequence ID 2L_DroMel_CAF1
Location 10,478,649 – 10,478,769
Length 120
Max. P 0.871953
window5684

overview

Window 4

Location 10,478,649 – 10,478,769
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.83
Mean single sequence MFE -34.83
Consensus MFE -29.49
Energy contribution -29.53
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.75
Structure conservation index 0.85
SVM decision value 0.87
SVM RNA-class probability 0.871953
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10478649 120 - 22407834
GUGGGCCAUUAAGGGUUUUGUCUAAAAUCUGGUUUUUGUUGCACAUCUUAGCAAAGCCCUAAAUUUUUAAGAAUCUACUGACGCCUAGGGGUGGCUUUAAAUUUCUAUGGCGGCCAGAAC
...((((....(((((((((.((((.((...((.......))..)).)))))))))))))......................((((((..((........))..))).)))))))..... ( -35.20)
>DroSec_CAF1 6996 120 - 1
GUGGGCCAUUAAGGGUUUUGUCUAAAAUCUGGUUUUUGUUGCACAUCUUAGCAGAGCCCUAAAUUUUUAAGAAUCUACUGACGCCUAGGGGUGGCUUUAAAUUUCUAUGGCGGCCAGAAC
...((((....(((((((((.((((.((...((.......))..)).)))))))))))))......................((((((..((........))..))).)))))))..... ( -35.30)
>DroSim_CAF1 7260 120 - 1
GUGGGCCAUUAAGGGUUUUGUCUAAAAUCUGGUUUUUGUUGCACAUCUUAGCAGAGCCCUAAAUUUUUAAGAAUCUACUGACGCCUAGGGGUGGCUUUAAAUUUCUAUGGCGGCCAGAAC
...((((....(((((((((.((((.((...((.......))..)).)))))))))))))......................((((((..((........))..))).)))))))..... ( -35.30)
>DroEre_CAF1 10229 120 - 1
GUGGGCCAUUAAGGGUUUUGUCUAAAAUCUGGUGUUUGUUGCACAUCUUAGCAGAGCCCUACAUUUUUAAGAAUGUACUGACGCCUAAGGGUGGCUUUAAAUUUCUUUGCCGGCCAGAAC
.(((((.....(((((((((.((((......((((.....))))...)))))))))))))((((((....))))))......))))).((.((((.............)))).))..... ( -38.02)
>DroYak_CAF1 7760 120 - 1
GUGGGCCAUUAAGGGUUUUGUCUAAAAUCUGGUUUUUGUUGCACAUCUUAGCAGAGCCCUAAAUUUUUAAGAAUGUACUGACGCCUAAGGGUGGCUUUAAAUUUCUAUGCCGUCCAGAAC
.(((((.....(((((((((.((((.((...((.......))..)).)))))))))))))..............((....))))))).((..(((.............)))..))..... ( -30.32)
>consensus
GUGGGCCAUUAAGGGUUUUGUCUAAAAUCUGGUUUUUGUUGCACAUCUUAGCAGAGCCCUAAAUUUUUAAGAAUCUACUGACGCCUAGGGGUGGCUUUAAAUUUCUAUGGCGGCCAGAAC
...((((....(((((((((.((((.((...((.......))..)).))))))))))))).........((((........((((....)))).........)))).....))))..... (-29.49 = -29.53 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:33 2006