Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,478,123 – 10,478,223 |
Length | 100 |
Max. P | 0.570356 |
Location | 10,478,123 – 10,478,223 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.18 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -13.65 |
Energy contribution | -13.58 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.25 |
Mean z-score | -2.03 |
Structure conservation index | 0.56 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570356 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10478123 100 - 22407834 ------GUACCUAAUUAAUUGUUUAAAUUAAUGCAGCAAAUUGCAUUUGCU--ACUCC--CUGAUUAGCUUUUUAAUUAAGU----------UUUAAGUGUGCGAUUGGAGCUGCUGCAU ------.......(((((((.....)))))))((((((....(((((((..--(((..--.(((((((....))))))))))----------..)))))))((.......)))))))).. ( -22.20) >DroSec_CAF1 6462 100 - 1 ------ACCCCUAAUUAAUUGUUUAAAUUAAUGCAGCAAAUUGCAUUUGCU--ACUCC--CUGAUUAGCUUUUUAAUUAAGU----------UUUAAGUGCGCGAUUGGAGCUGCUGCAU ------.......(((((((.....)))))))((((((....(((((((..--(((..--.(((((((....))))))))))----------..)))))))((.......)))))))).. ( -24.70) >DroSim_CAF1 6161 100 - 1 ------AGCCCUAAUUAAUUGUUUAAAUUAAUGCAGCAAAUUGCAUUCGCU--ACUCC--CUGAUUAGCUUUUUAAUUAAGU----------UUUAAGUGUGCGAUUGGAGCUGCUGCAU ------.((....(((((((.....)))))))(((((.((((((((.((((--(.((.--..)).))))...((((......----------.))))).))))))))...))))).)).. ( -23.80) >DroEre_CAF1 9633 106 - 1 UAAUGCAGCCCUAAUUAAUUGUUUAAAUUAAUCCAGCAAAUUGCAUUUGCG--ACUCC--CUGAUUAGCUUUUUAAUUAAGU----------UUUAAGUGUGCGAUUGGAGCUGCUGCAU ..(((((((....(((((((.....)))))))..(((.(((((((((((.(--(((..--.(((((((....))))))))))----------).)))..))))))))...)))))))))) ( -26.00) >DroWil_CAF1 24058 120 - 1 GUAUGCAUCUUCAAUUAAUACUUUUAAUUGAUGGCACAAAUUGCAUUUACUUGAUUCCAGUUAAUUUACUUUUUAAUUAUGUGCUAAUACGGUUUUAAUGUGCAAAUGCAGUUGUCGAAU ...(((....((((((((.....))))))))..)))..((((((((((((((((..((((((((........))))))..(((....)))))..)))).)))..)))))))))....... ( -24.10) >DroYak_CAF1 7200 106 - 1 UAAUUCAGCCCUAAUUAAUUGUUUAAAUUAAUGCAGCAAAUUGCAUUUGCU--GCUCC--CUGAUUAGCUUUUUAAUUAAGU----------UUUAAGUGCGCGAUUGGAGCUGCUGCAU .............(((((((.....)))))))((((((....((....)).--(((((--..((((.((..(((((......----------.))))).))..))))))))))))))).. ( -25.60) >consensus ______AGCCCUAAUUAAUUGUUUAAAUUAAUGCAGCAAAUUGCAUUUGCU__ACUCC__CUGAUUAGCUUUUUAAUUAAGU__________UUUAAGUGUGCGAUUGGAGCUGCUGCAU .............(((((((.....)))))))((((((..((.((.((((...(((...........((((.......))))..............)))..)))).)).)).)))))).. (-13.65 = -13.58 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:32 2006