Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,477,062 – 10,477,182 |
Length | 120 |
Max. P | 0.982653 |
Location | 10,477,062 – 10,477,182 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -32.38 |
Energy contribution | -32.34 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.11 |
Mean z-score | -1.30 |
Structure conservation index | 0.96 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10477062 120 + 22407834 UCGGCGCGAAUCAGUGGUUCGCGCGCUUAUCGAUAGGCAAUGUUUUGGUUUUGCUUGCUUUCGGCAUAAAAACGUAAUUUUCAUGCGGUUUUUGCGGCAAUUUAGGGACGUUUUUCGUUU ...((((((((.....))))))))(((((....)))))(((((((..(..(((((.((...(.((((.((((.....)))).)))).).....)))))))..)..)))))))........ ( -35.60) >DroSec_CAF1 5451 120 + 1 UUGGCGCGAAUCAGUGGUUCGCGCGCUUAUCGAUAGGCAAUGUUUUGGUUUUGCUUGCUUUCGGCAUAAAAACGUAAUUUUCAUGCGGUUUUUGCGGCAAUUUAGAGGCGUUUUUCGUUU ...((((((((.....))))))))(((((....)))))((((((((....(((((.((...(.((((.((((.....)))).)))).).....)))))))....))))))))........ ( -35.90) >DroSim_CAF1 5177 120 + 1 UUGGCGCGAAUCAGUGGUUCGCGCGCUUAUCGAUAGGCAAUGUUUUGGUUUUGCUUGCUUGCGGCAUAAAAACGUAAUUUUCAUGCGGUUUUUGCGGCAAUUUAGAGGCGUUCUUCGUUU ...((((((((.....))))))))(((((....)))))((((((((....(((((.((..((.((((.((((.....)))).)))).))....)))))))....))))))))........ ( -38.00) >DroEre_CAF1 8241 120 + 1 UUCCAGCGAAUCAGUGGUUCGCUCGCUUAUCGAUAGGCAAUGUUUUGGUUUUGUUUGCUUGCGGCAUAAAAACGUAGUUUUCAUGCGGAUUUUGCGGCAAUUUACAGGCGUUUUUCGUUU ..(((((((((.....))))))..(((((....))))).......)))....(((((.((((.(((.(((..((((.......))))..)))))).))))....)))))........... ( -30.70) >DroYak_CAF1 5868 120 + 1 UUCCCGCGAAUCAGUGGUUCGCGCGCUUAUCGAUAGGCAAUGUUUUGGUUUUGUUUGCUUUCGGCAUAAAAACGUAGUUUUCAUGCGGUUUUUGCGGCAAUUUAGUGGCGUUUUUCGUUU ....(((((((.....))))))).(((((....)))))((((((...(..(((((.((...(.((((.(((((...))))).)))).).....)))))))..)...))))))........ ( -28.80) >consensus UUGGCGCGAAUCAGUGGUUCGCGCGCUUAUCGAUAGGCAAUGUUUUGGUUUUGCUUGCUUUCGGCAUAAAAACGUAAUUUUCAUGCGGUUUUUGCGGCAAUUUAGAGGCGUUUUUCGUUU ...((((((((.....))))))))(((((....)))))((((((((....(((((.((...(.((((.((((.....)))).)))).).....)))))))....))))))))........ (-32.38 = -32.34 + -0.04)
Location | 10,477,062 – 10,477,182 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -24.82 |
Consensus MFE | -21.64 |
Energy contribution | -21.32 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.11 |
Mean z-score | -1.86 |
Structure conservation index | 0.87 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982653 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10477062 120 - 22407834 AAACGAAAAACGUCCCUAAAUUGCCGCAAAAACCGCAUGAAAAUUACGUUUUUAUGCCGAAAGCAAGCAAAACCAAAACAUUGCCUAUCGAUAAGCGCGCGAACCACUGAUUCGCGCCGA ...((....................((.......((((((((((...))))))))))(((..((((..............))))...)))....))(((((((.......))))))))). ( -25.44) >DroSec_CAF1 5451 120 - 1 AAACGAAAAACGCCUCUAAAUUGCCGCAAAAACCGCAUGAAAAUUACGUUUUUAUGCCGAAAGCAAGCAAAACCAAAACAUUGCCUAUCGAUAAGCGCGCGAACCACUGAUUCGCGCCAA .........................((.......((((((((((...))))))))))(((..((((..............))))...)))....))(((((((.......)))))))... ( -24.64) >DroSim_CAF1 5177 120 - 1 AAACGAAGAACGCCUCUAAAUUGCCGCAAAAACCGCAUGAAAAUUACGUUUUUAUGCCGCAAGCAAGCAAAACCAAAACAUUGCCUAUCGAUAAGCGCGCGAACCACUGAUUCGCGCCAA ...((((((.....)))........((((.....((((((((((...)))))))))).((......))............))))...)))....(.(((((((.......)))))))).. ( -25.70) >DroEre_CAF1 8241 120 - 1 AAACGAAAAACGCCUGUAAAUUGCCGCAAAAUCCGCAUGAAAACUACGUUUUUAUGCCGCAAGCAAACAAAACCAAAACAUUGCCUAUCGAUAAGCGAGCGAACCACUGAUUCGCUGGAA ..........(((.(((..((....((((.....((((((((((...))))))))))(....).................))))..))..))).)))((((((.......)))))).... ( -23.40) >DroYak_CAF1 5868 120 - 1 AAACGAAAAACGCCACUAAAUUGCCGCAAAAACCGCAUGAAAACUACGUUUUUAUGCCGAAAGCAAACAAAACCAAAACAUUGCCUAUCGAUAAGCGCGCGAACCACUGAUUCGCGGGAA ............((..........(((.......((((((((((...))))))))))(((..((((..............))))...)))....)))((((((.......)))))))).. ( -24.94) >consensus AAACGAAAAACGCCUCUAAAUUGCCGCAAAAACCGCAUGAAAAUUACGUUUUUAUGCCGAAAGCAAGCAAAACCAAAACAUUGCCUAUCGAUAAGCGCGCGAACCACUGAUUCGCGCCAA ...(((.....((.........)).((((.....((((((((((...))))))))))(....).................))))...)))......(((((((.......)))))))... (-21.64 = -21.32 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:30 2006