Locus 3594

Sequence ID 2L_DroMel_CAF1
Location 10,476,109 – 10,476,217
Length 108
Max. P 0.814498
window5676

overview

Window 6

Location 10,476,109 – 10,476,217
Length 108
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 96.30
Mean single sequence MFE -34.18
Consensus MFE -33.24
Energy contribution -33.24
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.97
SVM decision value 0.66
SVM RNA-class probability 0.814498
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10476109 108 + 22407834
CCCGUCAUUUGAGGCAACAUUUAAUGGCCACUGGCUAUGGGGCUAUAUGGCUAUAUGGCUAAAAAGCUAUAGGGCUCAUCCUGAAUAAACAGGGGUUGGUGUGUGUGG
.((((((((.(((....).)).))))))(((..(((...(((((.(((((((............))))))).)))))..((((......)))))))..))).....)) ( -34.90)
>DroSec_CAF1 4517 104 + 1
CCCGUCAUUUGAGGCAACAUUUAAUGGCCACUGGCUAUGGGGCUAUAUGGCUAUAUGGCUAAAAUGCUAUAGGGCUCAUCCUGAAUAAACAGGGGUUGGUGUGU----
...((((((.(((....).)).))))))(((..(((...(((((.((((((..............)))))).)))))..((((......)))))))..)))...---- ( -33.44)
>DroSim_CAF1 4275 108 + 1
CCCGUCAUUUGAGGCAACAUUUAAUGGCCACUGGCUAUGGGGCUAUAUGGCUAUAUGGCUAAAAAGCUAUAGGGCUCAUCCUGAAUAAACAGGGGUUGGUGUGUGCGU
...((((((.(((....).)).))))))(((..(((...(((((.(((((((............))))))).)))))..((((......)))))))..)))....... ( -34.20)
>consensus
CCCGUCAUUUGAGGCAACAUUUAAUGGCCACUGGCUAUGGGGCUAUAUGGCUAUAUGGCUAAAAAGCUAUAGGGCUCAUCCUGAAUAAACAGGGGUUGGUGUGUG_G_
...((((((.(((....).)).))))))(((..(((...(((((.((((((..............)))))).)))))..((((......)))))))..)))....... (-33.24 = -33.24 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:25 2006