Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,473,548 – 10,473,664 |
Length | 116 |
Max. P | 0.645233 |
Location | 10,473,548 – 10,473,664 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 94.48 |
Mean single sequence MFE | -26.28 |
Consensus MFE | -22.46 |
Energy contribution | -22.34 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.32 |
Structure conservation index | 0.85 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10473548 116 - 22407834 CUGGCGCAGAUAUACAAAUUUUCUUAUAAAUAUAGAAGUAUCUCUCACUAAAUUUGUUGUUCUUGCUUUUAAGCCCAUGAUCUAUUGUCAUCCUGGUGAUUUUGAGAUCUGGGGAC ..((((.(((...((((((((........((((....))))........))))))))...)))))))......((((.(((((...(((((....)))))....)))))))))... ( -28.29) >DroSec_CAF1 2035 116 - 1 CUGGCGCAGAUAUACAAAUUUUCUUAUAAAUAUAGAAGUAGCUCUCACUAAAAAUGUUGUUCUUGCUUUUAAGCCCAUGAUCUAUUGUCAUCCUGAUGAUUUCGAGAUCUGGGGAC ..((((.(((...(((...(((((.........)))))(((......)))....)))...)))))))......((((.(((((...(((((....)))))....)))))))))... ( -24.10) >DroSim_CAF1 1763 116 - 1 CUGGCGCAGAUAUACAAAUUUUCUUAUAAAUAUAGAAGUAGCUCUCACUAAAAAUGUUGUUCUUGCUUUUAAGCCCAUGAUCUAUUGUCAUCCUGGUGAUUUCGAGAUCUGGGGAC ..((((.(((...(((...(((((.........)))))(((......)))....)))...)))))))......((((.(((((...(((((....)))))....)))))))))... ( -24.90) >DroEre_CAF1 2008 115 - 1 CGAGCGCACAUAUACAAAUUUUCUUAUAAAUAUAGAAGUAGCUCUCACUAAA-GUGUUGUUGUUGCUUUUAAGCCCAUGAUCUAUUGUCAUCCUGGUGAUUUUGAGAUCUGGGGAC ................................((((((((((...(((....-))).....))))))))))..((((.(((((...(((((....)))))....)))))))))... ( -29.50) >DroYak_CAF1 2059 115 - 1 CGAGCGCACAUAUACAAAUUUUCCUAUAAAUAUAAAAGUAGCUCUCACUAAA-GUGUUGUUCUUGCUUUUAAGCCCAUGAUCUAUUGUCAUCCUGGUGAUUUUCAGAUCUGGGGAC ................................((((((((((...(((....-)))..))...))))))))..((((.((((((..(((((....)))))..).)))))))))... ( -24.60) >consensus CUGGCGCAGAUAUACAAAUUUUCUUAUAAAUAUAGAAGUAGCUCUCACUAAA_AUGUUGUUCUUGCUUUUAAGCCCAUGAUCUAUUGUCAUCCUGGUGAUUUUGAGAUCUGGGGAC ................................(((((((((.....((.......)).....)))))))))..((((.(((((...(((((....)))))....)))))))))... (-22.46 = -22.34 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:22 2006