Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,470,155 – 10,470,245 |
Length | 90 |
Max. P | 0.764892 |
Location | 10,470,155 – 10,470,245 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 78.85 |
Mean single sequence MFE | -21.37 |
Consensus MFE | -15.08 |
Energy contribution | -16.67 |
Covariance contribution | 1.58 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.71 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10470155 90 + 22407834 --------------UUAUCUCAGAUGGAUACUUGUGAAUCAUUUCAAUUAGUCGAUCAAUAGAUUUUAGGCAGCUAACUGGGCAGCCUUUGUUGCAAUCAAUCA --------------........(((.(((.....((((....))))....))).)))....((((....(((((.....((....))...)))))....)))). ( -18.10) >DroSec_CAF1 6428 104 + 1 GAAUUUUCAAGGGUUUAUCUCAGUUGGAUUAUUAUGAAUCAUUUCAAUUAGUCUAUCAAUGGAUUUUAGGCAGCUAACUGGGCAGCCUUUGUUGCAAUCAAUCA ((.....((((((((...(((((((((.......((((....))))....(((((...........)))))..))))))))).))))))))......))..... ( -25.70) >DroSim_CAF1 6828 92 + 1 GAAUUUUCAAGCGCUUAUCUCAGAUGGAUUAUUAUGAAUCAUUUCAAUUAGUCUAUCAAUAGAUUUUAGGC------------AGCCUUUGUUGCAAUCAAUCA ......................(((((((((...((((....))))..)))))))))....((((....((------------(((....)))))....)))). ( -20.30) >consensus GAAUUUUCAAG_G_UUAUCUCAGAUGGAUUAUUAUGAAUCAUUUCAAUUAGUCUAUCAAUAGAUUUUAGGCAGCUAACUGGGCAGCCUUUGUUGCAAUCAAUCA ......................(((((((((...((((....))))..)))))))))....(((...((((.(((.....))).))))..)))........... (-15.08 = -16.67 + 1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:20 2006