| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,122,963 – 1,123,060 |
| Length | 97 |
| Max. P | 0.704366 |
| Location | 1,122,963 – 1,123,060 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 90.78 |
| Mean single sequence MFE | -34.03 |
| Consensus MFE | -29.15 |
| Energy contribution | -29.38 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1122963 97 - 22407834 UAAUUGCCCUUGUCAACAGUUUCGUCUGGCGGCCGUAAAUCUUUCCGAUCGACGUCGGAUCGAAUUGCCGGUUGAGGCGGGAGGGUUGGGAGGUUAU .......((((.(((((..(..(((((..(((((((((.((..((((((....))))))..)).))).)))))))))))..)..))))))))).... ( -36.20) >DroSec_CAF1 9705 87 - 1 UAAUUGCCCUUGUCAACAGUUUCGUCUGGCGGCCGUAAAUCUUUCCGAUCGACGUCGGAUCGAAUUGCCGGUUGGGACG-GA---------GGGUAU ....((((((((((..(((......))).(((((((((.((..((((((....))))))..)).))).)))))).))).-))---------))))). ( -33.50) >DroSim_CAF1 9604 88 - 1 UAAUUGCCCUUGUCAACAGUUUCGUCUGGCGGCCGUAAAUCUUUCCGAUCGACGUCGGAUCGAAUUGCCGGUUGGGGCGGGA---------GGGUAU ....((((((((....)))(..(((((..(((((((((.((..((((((....))))))..)).))).)))))))))))..)---------))))). ( -32.40) >consensus UAAUUGCCCUUGUCAACAGUUUCGUCUGGCGGCCGUAAAUCUUUCCGAUCGACGUCGGAUCGAAUUGCCGGUUGGGGCGGGA_________GGGUAU ....(((((..........((((((((..(((((((((.((..((((((....))))))..)).))).)))))))))))))).........))))). (-29.15 = -29.38 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:52 2006