Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,467,928 – 10,468,027 |
Length | 99 |
Max. P | 0.790670 |
Location | 10,467,928 – 10,468,027 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -18.48 |
Consensus MFE | -16.46 |
Energy contribution | -16.90 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.32 |
Structure conservation index | 0.89 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790670 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10467928 99 - 22407834 UUAAACGCUAACUCGUUGCGAGCAGGUGUUUACUGCUGAAAUUAAACAAAAAUAAACAAUUAUCUGCUAGUCGAAUCUGAAGUUGAUCAAAACUGGCAA .((((((((..((((...))))..))))))))................................(((((((...(((.......)))....))))))). ( -19.60) >DroSec_CAF1 4167 99 - 1 UUAAACGCUAACUCGUUGCCAGCAGGUGUUUACUGCUGAAAUUAAACAAAAAUAAACAAUUAUCUGCUAGUCGCAUCUUAAGUUGAUCAAAACUGGCAA ...((((......))))..((((((.......))))))..........................(((((((...(((.......)))....))))))). ( -19.60) >DroSim_CAF1 4469 99 - 1 UUAAACGCUAACUCGUUGCCAGCAGGUGUUUACUGCUGAAAUUAAACAAAAAUAAACAAUUAUCUGCUAGUCGCAUCUUAAGUUGAUCAAAACUGGCAA ...((((......))))..((((((.......))))))..........................(((((((...(((.......)))....))))))). ( -19.60) >DroEre_CAF1 4086 98 - 1 AUAAACGCAAACUCGUUGCCAGCUGGUGUUUACUGCUGAAACUAAACAA-AAUAAACAAUUACCUGCUAGUCGCAUCUUAAGUUGAUCAAAACUGGCAA ......((((.....))))((((.(((....)))))))...........-..............(((((((...(((.......)))....))))))). ( -16.50) >DroYak_CAF1 4256 99 - 1 AUAAACGCAAACUUGUUGCCAGCAGGUGUUUACUGCUCAAAUUAAACAAAAAUAAACAAUUAUCUGCUAGUCUCAUCUCAAGUUGAUCAAAACUGGCAA ......((((.....)))).(((((.......)))))...........................(((((((...(((.......)))....))))))). ( -17.10) >consensus UUAAACGCUAACUCGUUGCCAGCAGGUGUUUACUGCUGAAAUUAAACAAAAAUAAACAAUUAUCUGCUAGUCGCAUCUUAAGUUGAUCAAAACUGGCAA ...((((......))))..((((((.......))))))..........................(((((((...(((.......)))....))))))). (-16.46 = -16.90 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:19 2006