Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,463,950 – 10,464,064 |
Length | 114 |
Max. P | 0.737418 |
Location | 10,463,950 – 10,464,064 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 74.30 |
Mean single sequence MFE | -26.64 |
Consensus MFE | -16.86 |
Energy contribution | -16.62 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.32 |
Mean z-score | -1.34 |
Structure conservation index | 0.63 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737418 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10463950 114 + 22407834 GCGUGCAGAUACAUUAUAAGGUCCUUUGACUUUGGAUCACGGUAGUGCACUUUGCACUCAUAGCAAUGCUCAUCUACUGUCACCUUGCCCACAUUGCAUCCACCUCCAUUC---AGU (.((((((...........(((((.........)))))(((((((.(((..((((.......)))))))....))))))).............)))))).)..........---... ( -25.30) >DroGri_CAF1 3831 113 + 1 GCGUGCAAAUACAUGACAAGGUCCUUUGGCUUUGGGUCCCGGUAGUGCACUUUGCACUCAUAACAAUGUUUAUCGAUAACAACUUUAUCGG-AUG---CCACACCCAUAUCCAAAGG .((((......)))).......(((((((...(((((...((((((((.....))))...............(((((((.....)))))))-.))---))..)))))...))))))) ( -33.40) >DroSim_CAF1 155 114 + 1 GCGUGCAGAUACAUUAUAAGGUCCUUUGACUUUGGAUCACGGUAGUGCACUUUGCACUCGUAGCAAUGCUCAUCUACUGUCACCUUGCCCGCAUUGCAUCCACCUCCGCUC---AGU (((((((((..((((((..(((((.........)))))...))))))...))))))).....(((((((.....................)))))))..........))..---... ( -30.30) >DroWil_CAF1 154 110 + 1 GCAUGCAGAUACAUUACUAGAUCCUUGGCCUUUGGAUCACGAUAGUGAACUUUACAUUCAUAACAAUGCUUAUCAAUAGUUAUUUUAUCUG----ACUUCAAGCCCACAUC---AAU ((.((((((((....(((((((((.........)))))..(((((((((.......))))).........))))..)))).....))))))----....)).)).......---... ( -17.30) >DroYak_CAF1 157 114 + 1 GCGUGCAGAUACAUUAUAAGGUCCUUUGAUUUCGGAUCACGAUAGUGCACUUUGCACUCGUAGCAAUGCUCAUCCACUGUUACCUUGUUCACAUUGCAUCCACCUGCACUC---AAU (.((((((...........(((((.........)))))((((..((((.....)))))))).((((((..((.............))....))))))......)))))).)---... ( -29.22) >DroAna_CAF1 148 114 + 1 GCAUGCAGAUACAUUAUAAGGUCCUUCGACUUUGGAUCGCGAUAGUGAACUUUGCACUCGUAGCAGUGCUCAUCAACGGUGACCUUGUUCAGUUUUGACCCACUCUCACCC---CCA ...((((((..((((((..(((((.........)))))...))))))...))))))...((((.((((....((((.(.(((......))).).))))..)))))).))..---... ( -24.30) >consensus GCGUGCAGAUACAUUAUAAGGUCCUUUGACUUUGGAUCACGAUAGUGCACUUUGCACUCAUAGCAAUGCUCAUCAACUGUCACCUUGUCCACAUUGCAUCCACCCCCACUC___AGU (.(((((((..((((((..(((((.........)))))...))))))...))))))).).......................................................... (-16.86 = -16.62 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:16 2006