Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,458,439 – 10,458,530 |
Length | 91 |
Max. P | 0.565892 |
Location | 10,458,439 – 10,458,530 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 77.61 |
Mean single sequence MFE | -28.87 |
Consensus MFE | -12.24 |
Energy contribution | -12.52 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.43 |
Mean z-score | -2.16 |
Structure conservation index | 0.42 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10458439 91 - 22407834 ACGGUCUUCAGCCAUCCCACAUCGUCAUGUGUGUGGGCCACCAGGUGCACGUUCAACAUGUUGGGUUUGGUUGGAUGGCAGCUCUGAAAAA ...(((((((((((.(((((((.((..((..((((.(((....))).))))..))))))).))))..)))))))).)))............ ( -32.40) >DroVir_CAF1 1 85 - 1 ACAGUCUUCAGCCAUCCAACGUCGUCGUGGGUGUGUGCUAUUAGAUGCACAUUUAGCAUAUUUGGUUUCGUCGGAUGACAGCUCU------ ...(((....((((((((.((....))))))))(((((........)))))....))..((((((.....)))))))))......------ ( -20.30) >DroGri_CAF1 1 91 - 1 ACCGUCUUUAGCCAGCCAACGUCAUCAUGGGUAUGCGCUAUAAGAUGCACAUUUAGCAUACCUGGUGGCGUUGGAUGACAACUCUGAAAAA ...(((.........((((((((((((..(((((((((........)).......)))))))))))))))))))..)))............ ( -30.11) >DroWil_CAF1 1 85 - 1 ACAGUUUUAAGCCAACCCACAUCGUCAUGGGUAUGAGCUAUAAGAUGUACAUUCAACAUAUUUGGCUUAGUGGGAUGGCAACUCU------ ..........((((.((((((((......))).(((((((....((((.......))))...)))))))))))).))))......------ ( -26.60) >DroMoj_CAF1 1 91 - 1 ACAGUUUUAAGCCAUCCAACAUCGUCGUGGGUGUGUGCGACAAUAUGCACAUUCAGCAUAUUGGGUUUCGUUGGAUGGCAGCUCUGAAAAA .(((......((((((((((...(((((........)))))(((((((.......))))))).......))))))))))....)))..... ( -33.80) >DroAna_CAF1 1 88 - 1 ACGGUCUUCAGCCAGCCCACAUCAUCGUGGGUGUGUGCCACAAGAUGCACGUUCAGCAUGUUGGGUUUUGUUGGGUGGCAGCUCUGAA--- .(((.(((((.(((((((((......))))))....(((.(((.((((.......)))).)))))).....))).))).))..)))..--- ( -30.00) >consensus ACAGUCUUCAGCCAUCCAACAUCGUCAUGGGUGUGUGCUACAAGAUGCACAUUCAGCAUAUUGGGUUUCGUUGGAUGGCAGCUCUGAA___ ...(((((((((...((((........((..((((((........))))))..))......))))....)))))).)))............ (-12.24 = -12.52 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:14 2006