Locus 3582

Sequence ID 2L_DroMel_CAF1
Location 10,455,888 – 10,456,004
Length 116
Max. P 0.875308
window5661 window5662

overview

Window 1

Location 10,455,888 – 10,456,004
Length 116
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.97
Mean single sequence MFE -33.12
Consensus MFE -22.42
Energy contribution -23.48
Covariance contribution 1.06
Combinations/Pair 1.21
Mean z-score -1.98
Structure conservation index 0.68
SVM decision value 0.89
SVM RNA-class probability 0.875308
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10455888 116 + 22407834
UAUGU----ACUCCAGAAUGGGUUACCUCGAAUCCACAGGUUGUCUCGCAUAUCGCUGUGUUCAGUAGAAACAGUGUGAUAAAUACGAGUAUGCCACCGAAGUAUUCCAUUUCGGUAAAC
.....----.........((((((......))))))..(((...((((..((((((..(((((....).))))..))))))....))))...)))((((((((.....)))))))).... ( -29.60)
>DroSec_CAF1 5093 120 + 1
UAUGUAUCUACUUCAGAAUGGGUUACCUCGAAUCCACAGGUUGCCUCGCAUAUCGCUGUGUUCAGUAGAAACAGUGCGAUAAAUGCGAGUGUGCCACCGAAGUAUUCCAUUUCGGUGAAC
...........(((....((((((......))))))..(((...((((((((((((..(((((....).))))..))))))..))))))...)))((((((((.....))))))))))). ( -36.30)
>DroSim_CAF1 4881 120 + 1
UAUGUAUAUACUUCCGAAUGGGUUACCUCGAAUCCACAGGUUGUCUCGCAUAUCGCUGUGUUCAGUAGAAACAGUGCGAUAAAUGCGAGUGUGCCACCCAAGUAUUCCAUUUCGGUGAAC
.............((((((((..(((...(....)...(((...((((((((((((..(((((....).))))..))))))..))))))...)))......)))..))).)))))..... ( -33.90)
>DroEre_CAF1 5767 116 + 1
---UUAUGUACUUCA-AAUGCGUUACCUCAAAUCCACAGGUUGUCUCGCAUAUCGCUGUGUUCAGUAGAAACAGAGUGAUAAAAGCGAGGGUACCACUGAAGUAUUCCAUUUCGGUGGAC
---....((((((((-..((.(((......))).))..(((..((((((.(((((((.(((((....).)))).)))))))...))))))..)))..))))))))(((((....))))). ( -35.60)
>DroYak_CAF1 6076 117 + 1
---UUAGGUACUUCAGAAUGGGUUACCGCAAAUCCACAGGUCGUCUCGCAUAUCGCUGUGUUCAGUAGAAACAGAGUGAUAAAAGCGAGGGAACCACUGAAGUAUUCCAUUUCGGUGAAU
---...((((((((((..((((((......))))))..(((..((((((.(((((((.(((((....).)))).)))))))...))))))..))).))))))))..))............ ( -41.70)
>DroAna_CAF1 7443 107 + 1
---UUA----------AUCAAGUUACCUCGAAUCCACAGGUAGCCUCGGAUACCGAAGCAUACGGUAGCACUAAUGCGAUAAAUAUUAGCACUCUACCGAAAUAUUCCAUUUCAGUGAAC
---...----------.......(((((.(......))))))((.((((...)))).)).((((((((..((((((.......))))))....)))))(((((.....))))).)))... ( -21.60)
>consensus
___GUAU_UACUUCAGAAUGGGUUACCUCGAAUCCACAGGUUGUCUCGCAUAUCGCUGUGUUCAGUAGAAACAGUGCGAUAAAUGCGAGUGUGCCACCGAAGUAUUCCAUUUCGGUGAAC
..................((((((......))))))..(((...(((((.((((((..(((((....))).))..))))))...)))))...)))((((((((.....)))))))).... (-22.42 = -23.48 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

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Window 2

Location 10,455,888 – 10,456,004
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.97
Mean single sequence MFE -34.00
Consensus MFE -19.86
Energy contribution -19.98
Covariance contribution 0.12
Combinations/Pair 1.29
Mean z-score -2.22
Structure conservation index 0.58
SVM decision value 0.76
SVM RNA-class probability 0.843005
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10455888 116 - 22407834
GUUUACCGAAAUGGAAUACUUCGGUGGCAUACUCGUAUUUAUCACACUGUUUCUACUGAACACAGCGAUAUGCGAGACAACCUGUGGAUUCGAGGUAACCCAUUCUGGAGU----ACAUA
((...(((.(((((..((((((((...((((((((((..((((...(((((((....))).)))).))))))))))......))))...))))))))..))))).)))...----))... ( -32.50)
>DroSec_CAF1 5093 120 - 1
GUUCACCGAAAUGGAAUACUUCGGUGGCACACUCGCAUUUAUCGCACUGUUUCUACUGAACACAGCGAUAUGCGAGGCAACCUGUGGAUUCGAGGUAACCCAUUCUGAAGUAGAUACAUA
.((((..(((.(((..((((((((...((((((((((..((((((..(((((.....)))))..))))))))))))......))))...))))))))..))))))))))........... ( -36.60)
>DroSim_CAF1 4881 120 - 1
GUUCACCGAAAUGGAAUACUUGGGUGGCACACUCGCAUUUAUCGCACUGUUUCUACUGAACACAGCGAUAUGCGAGACAACCUGUGGAUUCGAGGUAACCCAUUCGGAAGUAUAUACAUA
.....(((((.(((..(((((.((...((((((((((..((((((..(((((.....)))))..))))))))))))......))))...)).)))))..))))))))............. ( -37.50)
>DroEre_CAF1 5767 116 - 1
GUCCACCGAAAUGGAAUACUUCAGUGGUACCCUCGCUUUUAUCACUCUGUUUCUACUGAACACAGCGAUAUGCGAGACAACCUGUGGAUUUGAGGUAACGCAUU-UGAAGUACAUAA---
.((((......)))).((((((((((.(((((((((...((((.((.(((((.....))))).)).)))).)))))....((...))......)))).)))...-))))))).....--- ( -32.00)
>DroYak_CAF1 6076 117 - 1
AUUCACCGAAAUGGAAUACUUCAGUGGUUCCCUCGCUUUUAUCACUCUGUUUCUACUGAACACAGCGAUAUGCGAGACGACCUGUGGAUUUGCGGUAACCCAUUCUGAAGUACCUAA---
............((..((((((((.((((..(((((...((((.((.(((((.....))))).)).)))).)))))..)))).((((.((......)).)))).))))))))))...--- ( -33.20)
>DroAna_CAF1 7443 107 - 1
GUUCACUGAAAUGGAAUAUUUCGGUAGAGUGCUAAUAUUUAUCGCAUUAGUGCUACCGUAUGCUUCGGUAUCCGAGGCUACCUGUGGAUUCGAGGUAACUUGAU----------UAA---
((((((.((((((...))))))(((((...((((((.........)))))).)))))(((.(((((((...))))))))))..))))))(((((....))))).----------...--- ( -32.20)
>consensus
GUUCACCGAAAUGGAAUACUUCGGUGGCACACUCGCAUUUAUCACACUGUUUCUACUGAACACAGCGAUAUGCGAGACAACCUGUGGAUUCGAGGUAACCCAUUCUGAAGUA_AUAA___
.........(((((..((((((((.......(((((...((((...(((((((....))).)))).)))).)))))((.....))....))))))))..)))))................ (-19.86 = -19.98 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:11 2006