| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,455,439 – 10,455,540 |
| Length | 101 |
| Max. P | 0.688142 |
| Location | 10,455,439 – 10,455,540 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 79.38 |
| Mean single sequence MFE | -24.05 |
| Consensus MFE | -15.08 |
| Energy contribution | -16.56 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.688142 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10455439 101 + 22407834 CUA--------UAUAUCUUAUCCUUU------UAAUGGAAGUUAACCUACCUUAAGCCCAGGUUAAACUGAUCUACAACACUUUGAUAGUGAACUGUGGCCUCAUCGUUCAUGCU ...--------..((((...(((...------....)))(((((((((...........))))).))))...............))))((((((.(((....))).))))))... ( -17.30) >DroSec_CAF1 4638 107 + 1 CUA--------UAUAUGUUAUAGUUUUAACUUUUAUGGAAGUUAACCUACCUUAAACCCAGGUUAAACUGAUCUAUAACACUUUGGUAGUGAACGGUGGCCUCAUCGUUCAUGCU ...--------....((((((((..((((((((....)))))))).............(((......)))..))))))))....((((.(((((((((....))))))))))))) ( -28.00) >DroSim_CAF1 4427 106 + 1 UAAUGAACA--UAUAUCUUAU-------CCUCUAAUGGAAGUUAACCUACCUUAAACCCAGAUUGAACUGAUCUAUAACACUUUGGUAGUGAACGGUGGCCUCAUCGUUCAUGCU ..((((((.--.........(-------((......))).(((...(((((........(((((.....)))))..........)))))..)))((((....))))))))))... ( -21.57) >DroEre_CAF1 5301 108 + 1 UUAUGAACAUAAGUAUCUCAUCGUU-------UUAUUGGAGUGAACCUACCUUAAGCCCAGGUUAAACUGAUCAAUAACGCUUUGGUAGUGAACGGUGGCCUCAUCGUUCAUACU .(((((((((.((....((((((((-------((((..(((((...((......))..(((......)))........)))))..)))..))))))))).)).)).))))))).. ( -25.90) >DroYak_CAF1 5635 102 + 1 UUAU-----UAUAUAUCUCAUAGUU--------UGUAGUGGUGAACCCACCUUAAGCCCAGGUUAAACUGGUCAAUAACACUUUGGUAGUGAACGGUGGCCUCAUCGUUCAUACU ....-----....((((.....(((--------((..((((.....))))..)))))((((......)))).............))))((((((((((....))))))))))... ( -27.50) >consensus UUAU_______UAUAUCUUAUAGUU_______UUAUGGAAGUUAACCUACCUUAAGCCCAGGUUAAACUGAUCUAUAACACUUUGGUAGUGAACGGUGGCCUCAUCGUUCAUGCU ................................((((((((((((((((...........)))))).)))..)))))))..........((((((((((....))))))))))... (-15.08 = -16.56 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:09 2006