| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,453,071 – 10,453,182 |
| Length | 111 |
| Max. P | 0.515086 |
| Location | 10,453,071 – 10,453,182 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.82 |
| Mean single sequence MFE | -32.38 |
| Consensus MFE | -21.08 |
| Energy contribution | -21.67 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.515086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10453071 111 + 22407834 GAAUACCGAAGAAAUCGGGAAUC---AUGUUCCUGUUUACAGAGGCGACGCCAUUGGACUUGCUAAAGAACUUCCAGAAGUGUUGGUCCAACUGGUGUUGCAGCAAUCUU------UGAU ......((((((...(((((((.---..)))))))......(..((((((((((((((((.((......((((....)))))).))))))).)))))))))..)..))))------)).. ( -38.70) >DroSec_CAF1 2270 111 + 1 GAAUACCGAAAAAGUCGGGAAUC---AUGUUCUUCUUUACAGAGGCGACGCCAUUGGACUUGCUGAAGAACUUCCAGAAGUGUUGGUCCAACUGGUGUUGCAGCAAUCUU------UGAU ((...((((.....))))...))---.............(((((((((((((((((((((.((......((((....)))))).))))))).)))))))))......)))------)).. ( -33.20) >DroSim_CAF1 2057 114 + 1 GAAUACCGAAAAAGUCGGGAAUCAUCAUGUUCUUGUUUACAGAGGCGACGCCAUUGGACUUGCUAAAGAACUUCCAGAAGUGUUGAUCCAACUGGUGUUGCAGCAAUCUU------UGAU (((((((((.....))))((....)).))))).......((((((((((((((((((((((....))).((((....)))).....))))).)))))))))......)))------)).. ( -30.30) >DroEre_CAF1 2960 111 + 1 GAAAAUCGAAGAAAUCGGGAAUC---AUGUGCCUGUUCACAGAGGCGACGCUAUUGGACUUGCUGAAGAACUUCCAGAAGUGCUGGUCCAACUGGUGUUGCAGCAAUCUU------UGGU ....((((((((...((((....---.....))))......(..((((((((((((((((.((......((((....)))))).))))))).)))))))))..)..))))------)))) ( -35.60) >DroYak_CAF1 3280 111 + 1 GAAAAUCAUAGAAAUCGGGAAUC---AAGUGCCUGUUUACAGAGGCGACGCCAUUCGACUUGCUGAAGAACUUCCAGAAGUGUUGGUCCAACUGGUGUUGCACCAAUCGC------UGAU .............(((((((...---......(((....)))..(((((((((((.((((.((......((((....)))))).)))).)).))))))))).....)).)------)))) ( -26.40) >DroAna_CAF1 4613 117 + 1 GAAACACGUCGAAAUCGGGUAAU---AGAUUUCGCUUGACAGAGGCAACAUUAUUUGAUUUGCUGAAAAACUUCCAAAAUGGUAAGUGCAGUUCGAGUUGCGUGGAUCUCUCCGCAUGAU ....((.(.(((((((.......---.)))))))).))......(((((.....((((...((((....((((((.....)).)))).)))))))))))))(((((....)))))..... ( -30.10) >consensus GAAAACCGAAGAAAUCGGGAAUC___AUGUUCCUGUUUACAGAGGCGACGCCAUUGGACUUGCUGAAGAACUUCCAGAAGUGUUGGUCCAACUGGUGUUGCAGCAAUCUU______UGAU .....((((.....))))..........................((((((((((((((((.((..................)).))))))).)))))))))................... (-21.08 = -21.67 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:08 2006