Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,121,664 – 1,121,784 |
Length | 120 |
Max. P | 0.995701 |
Location | 1,121,664 – 1,121,784 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.59 |
Mean single sequence MFE | -29.04 |
Consensus MFE | -24.36 |
Energy contribution | -24.52 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.10 |
Mean z-score | -2.47 |
Structure conservation index | 0.84 |
SVM decision value | 2.61 |
SVM RNA-class probability | 0.995701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1121664 120 - 22407834 GGAGAGCUGAAAAAUAAACGUACUUAAACGUAAAUCACUUAGAUUGCAGUUUUCCCGAUGGAAAUCUCCGGGAAUUCUAAGCACACUUCGGAAAAUAAUAAACAGCUUUUCGUUUUCUAA (((((((((........((((......))))...((....((..(((((..((((((..((....)).))))))..))..)))..))...))..........)))))))))......... ( -28.80) >DroSec_CAF1 8440 117 - 1 GGAGAGCUGAAAA---AACGAACUUAAACGUAAAUCACUUAGAUUGCAGUUUUCCCGAUGGAAAUCUCCGGGAAUUCUAAGCACGCUUCGGAAAAUAAUAAACAGCUUUUCGUUUUCAAA (((((((((....---.(((........)))...((....((..(((((..((((((..((....)).))))))..))..)))..))...))..........)))))))))......... ( -28.00) >DroSim_CAF1 8354 117 - 1 GGAGAGCUGAAAA---AACGUACUUAAGCGUAAAUCACUUAGAUUGCAGUUUUCCCGAUGGAAAUCUCCGGGAAUUCUAAGCACGCUUUGGAAAAUAAUAAACAGCUUUUCGUUUUCUAA (((((((((....---......((.((((((.((((.....))))((((..((((((..((....)).))))))..))..)))))))).))...........)))))))))......... ( -32.20) >DroEre_CAF1 8737 116 - 1 GGAGAGCUGAAAA---AACCUACUUAAACGUAAAUCACUUAGAUUGUAGUUUUCCCAUUGAAAAUCGCCGGCAAUUCCAUGCACACUUCGGAAAAUGCUA-ACAGCUUUCCGUUUUGAAA (((((((((....---................((((.....))))(..((((((.....))))))..).((((.((((...........))))..)))).-.)))))))))......... ( -26.10) >DroYak_CAF1 8814 117 - 1 GGAGAGCUGAAAA---AACGCACUUAAACGUAAAUCACUUAGAUUGUAGUUUUCCCAUAGGAAAUCUCCGGGAAUUCCAAGCACACUUCGGAAAAUAAUAAACAGCUUUCCGAUUUGUUU (((((((((....---.........((((...((((.....))))...))))((((...(((....))))))).(((((((....))).)))).........)))))))))......... ( -30.10) >consensus GGAGAGCUGAAAA___AACGUACUUAAACGUAAAUCACUUAGAUUGCAGUUUUCCCGAUGGAAAUCUCCGGGAAUUCUAAGCACACUUCGGAAAAUAAUAAACAGCUUUUCGUUUUCUAA (((((((((................((((...((((.....))))...))))((((...(((....))))))).(((((((....))).)))).........)))))))))......... (-24.36 = -24.52 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:51 2006