Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,452,274 – 10,452,389 |
Length | 115 |
Max. P | 0.617918 |
Location | 10,452,274 – 10,452,389 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 90.26 |
Mean single sequence MFE | -24.46 |
Consensus MFE | -18.08 |
Energy contribution | -18.08 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.25 |
Mean z-score | -1.76 |
Structure conservation index | 0.74 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617918 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10452274 115 + 22407834 AAUUGUUUUUUAGACCACAAAUUUUAUACCAAUUUUGCCUUUUGAAAAGCCAUAAAUUCUUUAGCGUGACUAAGCUCGAAAAUGGCUUUCUGCUAUUAAGCAGCAGCUAACUUCA ....((((((((((...((((............))))...))))))))))............(((........))).(((..(((((..(((((....))))).)))))..))). ( -21.20) >DroSec_CAF1 1470 115 + 1 AAUAACUUUCUAGACCACAAAUUUUAUACCAAUUUUACCUCUUGAAAAGUCAUAAAUUCUUUAGCGUGACUAAGCUCGGAAAUGGCUUUCUGCUAUUAAGCAGCAGCUAAGUUCA ......((((.(((....(((((.......)))))....))).))))((((((............))))))......(((..(((((..(((((....))))).)))))..))). ( -20.10) >DroSim_CAF1 1249 115 + 1 AAUAACUUUCUAGACCAGAAAUUUUAUACCAAUUUUGCCUCUUGAAAAGCCAUAAAUUCUUUAGCGUGACUAAGCUCGGAAAUGGCUUUUUGCUAUUAAGCAGCAGCUAAGUUCA ......(((((.....))))).............((((.....((((((((((...((((..(((........))).))))))))))))))(((....))).))))......... ( -22.00) >DroEre_CAF1 2167 115 + 1 AAUAGUUUUCUAGGCAGGAAAUUUUAUACUAAUUUUUCCUCUUGGAAAGCAAUAAAUUCCUUAGCGUGACUAAGCUCGGAAAUGGCUUUCUGGCAUUAAGCAGCAGCUAACUUCA ....((((((((((.((((((..(((...)))..))))))))))))))))..........(((((.((..(((((.((((((....)))))))).)))..))...)))))..... ( -31.40) >DroYak_CAF1 2500 115 + 1 AAUAGUUUUCUAGACAAGAAAUUGUAUACUAAUUUUUCCUCUUGGAAAGCAAUCAAUUCUUUAGCGUGACUAAGCUCGGAAAUGGCUUUCUGCUAUUAGGCAGCAGCUAACUUCA ....((((((((((..((((((((.....))))))))..)).))))))))......((((..(((........))).)))).(((((..(((((....))))).)))))...... ( -27.60) >consensus AAUAGUUUUCUAGACCAGAAAUUUUAUACCAAUUUUGCCUCUUGAAAAGCCAUAAAUUCUUUAGCGUGACUAAGCUCGGAAAUGGCUUUCUGCUAUUAAGCAGCAGCUAACUUCA ....((((((((((...((((((.......))))))...)).))))))))............(((........))).(((..(((((..(((((....))))).)))))..))). (-18.08 = -18.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:07 2006