Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,443,910 – 10,444,047 |
Length | 137 |
Max. P | 0.989750 |
Location | 10,443,910 – 10,444,016 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 92.92 |
Mean single sequence MFE | -33.58 |
Consensus MFE | -29.40 |
Energy contribution | -29.80 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.08 |
Mean z-score | -1.92 |
Structure conservation index | 0.88 |
SVM decision value | 2.18 |
SVM RNA-class probability | 0.989750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10443910 106 + 22407834 UUAGGAACUCGCAUACCCGCCAACUUGUACAC--UUCUAGGGUAUGCAAUUGCCGCUCCACGAAUGUGUGUCACUGGCGGCAGAGCACUUUGCUCUUUAUAAGGAAUC- ..........((((((((..............--.....))))))))...(((((((.((((....)))).....)))))))((((.....)))).............- ( -32.11) >DroSec_CAF1 4294 106 + 1 UUAGGAACACGCAUACCCGCCAACUCGUACAC--UUCUAGGGUAUGCAAUUGCCGCUCCACGAAUGUGUGUCACUGGCGGCAUAGCACUUUGCUCUUUAUAAGGAGUC- ..........((((((((..............--.....))))))))...(((((((.((((....)))).....))))))).........((((((....)))))).- ( -30.61) >DroSim_CAF1 4266 106 + 1 UUAGGAACACGCAUACCCGCCAACUCGUACAC--UUCUAGGGUAUGCAAUUGCCGCUCCACGAAUGUGUGUCACUGGCGGCAGAGCACUUUGCUCUUUAUAAGGAGUC- ..........((((((((..............--.....))))))))...(((((((.((((....)))).....)))))))((((.....)))).............- ( -32.11) >DroEre_CAF1 4380 106 + 1 UUAGGAACUCGCAUACCCGCU-ACUCGUACAC--UUCUAGGGUAUGCAAUUGCCGCCCAAAGAAUGUGUGUCACUGGCGGCAGAGCACUUUGCUCUUCAUAAGGAGUCU ...(((.(((((((((((...-..........--.....))))))))...(((((((....((.......))...)))))))((((.....))))........)))))) ( -35.67) >DroYak_CAF1 4353 108 + 1 UUAGGAACUCGUAUACCCGCU-ACUCACACACAGUUCUAGGGUAUGCAAUUGCCGCCCAACGAAUGUGUGUCACUGGCGGCAGAGCACUUUGCUCUUUAUAAGGAGUCU ...(((.(((.((((.(((((-(.(.(((((((.(((..((((..((....)).))))...)))))))))).).)))))).(((((.....))))).))))..)))))) ( -37.40) >consensus UUAGGAACUCGCAUACCCGCCAACUCGUACAC__UUCUAGGGUAUGCAAUUGCCGCUCCACGAAUGUGUGUCACUGGCGGCAGAGCACUUUGCUCUUUAUAAGGAGUC_ ......((((((((((((.....................))))))))...(((((((....((.......))...)))))))((((.....))))........)))).. (-29.40 = -29.80 + 0.40)
Location | 10,443,910 – 10,444,016 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 92.92 |
Mean single sequence MFE | -34.15 |
Consensus MFE | -28.12 |
Energy contribution | -28.96 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.04 |
Mean z-score | -1.53 |
Structure conservation index | 0.82 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774703 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10443910 106 - 22407834 -GAUUCCUUAUAAAGAGCAAAGUGCUCUGCCGCCAGUGACACACAUUCGUGGAGCGGCAAUUGCAUACCCUAGAA--GUGUACAAGUUGGCGGGUAUGCGAGUUCCUAA -............(((((.....)))))((((((..(((.......)))..).)))))..((((((((((..((.--.(....)..))...))))))))))........ ( -32.80) >DroSec_CAF1 4294 106 - 1 -GACUCCUUAUAAAGAGCAAAGUGCUAUGCCGCCAGUGACACACAUUCGUGGAGCGGCAAUUGCAUACCCUAGAA--GUGUACGAGUUGGCGGGUAUGCGUGUUCCUAA -.............(((((........(((((((..(((.......)))..).))))))...((((((((..((.--.(....)..))...)))))))).))))).... ( -30.00) >DroSim_CAF1 4266 106 - 1 -GACUCCUUAUAAAGAGCAAAGUGCUCUGCCGCCAGUGACACACAUUCGUGGAGCGGCAAUUGCAUACCCUAGAA--GUGUACGAGUUGGCGGGUAUGCGUGUUCCUAA -.............(((((..((((.((((((((.((..(((......)))..)))))..(((.((((.......--)))).)))...)))))))))...))))).... ( -31.80) >DroEre_CAF1 4380 106 - 1 AGACUCCUUAUGAAGAGCAAAGUGCUCUGCCGCCAGUGACACACAUUCUUUGGGCGGCAAUUGCAUACCCUAGAA--GUGUACGAGU-AGCGGGUAUGCGAGUUCCUAA .(((((.......(((((.....)))))((((((...((.......))....))))))....((((((((.....--..........-...)))))))))))))..... ( -36.67) >DroYak_CAF1 4353 108 - 1 AGACUCCUUAUAAAGAGCAAAGUGCUCUGCCGCCAGUGACACACAUUCGUUGGGCGGCAAUUGCAUACCCUAGAACUGUGUGUGAGU-AGCGGGUAUACGAGUUCCUAA .(((((..((((.(((((.....))))).((((.(.(.((((((((((...(((..((....))...)))..))).))))))).).)-.)))).)))).)))))..... ( -39.50) >consensus _GACUCCUUAUAAAGAGCAAAGUGCUCUGCCGCCAGUGACACACAUUCGUGGAGCGGCAAUUGCAUACCCUAGAA__GUGUACGAGUUGGCGGGUAUGCGAGUUCCUAA .(((((.......(((((.....)))))((((((..(((.......)))..).)))))....((((((((.....................)))))))))))))..... (-28.12 = -28.96 + 0.84)
Location | 10,443,942 – 10,444,047 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.62 |
Mean single sequence MFE | -29.04 |
Consensus MFE | -17.16 |
Energy contribution | -18.64 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.05 |
Mean z-score | -1.98 |
Structure conservation index | 0.59 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676400 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10443942 105 - 22407834 UAUGUACUAUGUUAUGUUGUUAGCAUUUCUG-----GAUUCCUUAUAAAGAGCAAAGUGCUCUGCCGCCAGUGACACACAUUCGUGGAGCGGCAAUUGCAUACCCUAGAA- ........((((((......))))))(((((-----(...........(((((.....)))))((((((..(((.......)))..).)))))...........))))))- ( -26.20) >DroSec_CAF1 4326 94 - 1 -AUAUACUAUGUAAUGU----------UCUG-----GACUCCUUAUAAAGAGCAAAGUGCUAUGCCGCCAGUGACACACAUUCGUGGAGCGGCAAUUGCAUACCCUAGAA- -...............(----------((((-----(.(((........)))....((((..(((((((..(((.......)))..).))))))...))))...))))))- ( -22.70) >DroSim_CAF1 4298 94 - 1 -AUAUACUAUGUAAUGU----------UCUG-----GACUCCUUAUAAAGAGCAAAGUGCUCUGCCGCCAGUGACACACAUUCGUGGAGCGGCAAUUGCAUACCCUAGAA- -......((((((((..----------....-----............(((((.....)))))((((((..(((.......)))..).))))).))))))))........- ( -24.10) >DroEre_CAF1 4411 101 - 1 -AUAU---AUGGG-----GUUAGCAGUUCCAGAGGAGACUCCUUAUGAAGAGCAAAGUGCUCUGCCGCCAGUGACACACAUUCUUUGGGCGGCAAUUGCAUACCCUAGAA- -....---.((((-----((..((((((...(((....))).......(((((.....)))))((((((...((.......))....))))))))))))..))))))...- ( -38.90) >DroYak_CAF1 4385 102 - 1 -AUAU---AUGUA-----GUUAGCAGUUCCAGAGGAGACUCCUUAUAAAGAGCAAAGUGCUCUGCCGCCAGUGACACACAUUCGUUGGGCGGCAAUUGCAUACCCUAGAAC -...(---(((((-----(((..........(((....))).......(((((.....)))))((((((...(((........))).)))))))))))))))......... ( -33.30) >consensus _AUAUACUAUGUAAUGU_GUUAGCA_UUCUG_____GACUCCUUAUAAAGAGCAAAGUGCUCUGCCGCCAGUGACACACAUUCGUGGAGCGGCAAUUGCAUACCCUAGAA_ ........(((((((.................................(((((.....)))))((((((..(((.......)))..).))))).))))))).......... (-17.16 = -18.64 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:06 2006