Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,440,828 – 10,440,940 |
Length | 112 |
Max. P | 0.680475 |
Location | 10,440,828 – 10,440,940 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.56 |
Mean single sequence MFE | -23.58 |
Consensus MFE | -19.62 |
Energy contribution | -19.82 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.83 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10440828 112 + 22407834 CCCCCAAUAUUUUACUACGAAUCCGCCCCUGCCAUUAUGUCAAUUUUUAUGACCGCCUACAAAUUGUGAAAUAUGUAGAAGGGGCACUUGUGAAGUUAUAGCAAUAUAAAAU-------- .........((((((...(....)((((((((..(((((........)))))..))(((((.(((....))).))))).))))))....))))))(((((....)))))...-------- ( -23.60) >DroSec_CAF1 1200 120 + 1 CCCCCAAUAUUUUACUACGAAUCCGCCCCUGCCAUUAUGUCAAUUUUUAUGACCGCCUACAAAUUGUGAAAUAUGUAGAAGGGGCACUUAUGAAGUUAUAGCGACAUGAAAUAGUUAACU .............((((.......((((((((..(((((........)))))..))(((((.(((....))).))))).))))))..(((((..((....))..)))))..))))..... ( -25.30) >DroSim_CAF1 1204 120 + 1 CCCCCAAUAUUUUACUACGAAUCCGCCCCUGCCAUUAUGUCAAUUUUUAUGACCGCCUACAAAUUGUGAAAUAUGUUGAAGGGGCACUUGUGAAGUUAUAGCAAUAUAAAAUAGUUAACU .............((((.......((((((..((.(((((((((((.((........)).))))))....))))).)).))))))..........(((((....)))))..))))..... ( -20.20) >DroEre_CAF1 1191 105 + 1 CCCCCAAUAUUUUACUACGAAUCCGCCCCUGCCAUUAUGUCAAUUUUUAUGACCGCCUACAGAUUGUGAAAUAUGUAGUAGGGGCACUUUUGAAGUUAUAGCAAU--------------- .......(((...(((.((((...((((((((......((((.......))))....((((.(((....))).))))))))))))...)))).))).))).....--------------- ( -24.40) >DroYak_CAF1 1200 105 + 1 CCCCCAAUAUUUUACUACGAAUCCGCCCCUGCCAUUAUGUCAAUUUUUAUGACCGCCUACAAAUUGUGAAAUAUGUAGUAGGGGCACUUUUGAAGUUAUAGCAAU--------------- .......(((...(((.((((...((((((((......((((.......))))....((((.(((....))).))))))))))))...)))).))).))).....--------------- ( -24.40) >consensus CCCCCAAUAUUUUACUACGAAUCCGCCCCUGCCAUUAUGUCAAUUUUUAUGACCGCCUACAAAUUGUGAAAUAUGUAGAAGGGGCACUUGUGAAGUUAUAGCAAUAU_AAAU________ .......(((...(((.((.....((((((((..(((((........)))))..))(((((.(((....))).))))).)))))).....)).))).))).................... (-19.62 = -19.82 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:03 2006