Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,426,777 – 10,426,892 |
Length | 115 |
Max. P | 0.759295 |
Location | 10,426,777 – 10,426,892 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 88.99 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -22.61 |
Energy contribution | -23.83 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.09 |
Mean z-score | -2.34 |
Structure conservation index | 0.80 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759295 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10426777 115 + 22407834 UCAGUAUGUUUUUUCUCAAUUUUUUUCGUUAGAGAUGGUCGAAUUUUCAUUAAAAAAAUCAUGUGGCGGCACUUAUCGAUAUCGAUAGGCAGUGGCCAUGUUAUCAAACUUAUUC ...........................(((.(((((((........))))).........(((((((.((.(((((((....)))))))..)).)))))))..)).)))...... ( -22.90) >DroSec_CAF1 3057 112 + 1 UCGGUGUGAUUUUUUACCAAAUUUUUUUUUAGAGAUGGUCGAAUUUUCAUUAAAAAAAUCAUGUGGCGGCUCUUAUCGAUAUCGAUAAGCAGUGGCCAUGUUAUCAAACUUA--- ..(((((((((((((((((..(((......)))..)))).((....))....))))))))))(((((.((((((((((....))))))).))).)))))...))).......--- ( -32.30) >DroSim_CAF1 3040 115 + 1 UCAUUGUGAUUUUUUACCAUACUUUUUGUUAGAGAUGGUCGAAUUUUCAUUAAAAAAAUCAAGUGGCGGCUCCUAUCGAUAUCGAUAAGCAGUGGCCAUGUUAUCAAACUUAUUC ......((((((((((((((.((((.....))))))))).((....))....))))))))).(((((.((((.(((((....))))).).))).)))))................ ( -29.40) >consensus UCAGUGUGAUUUUUUACCAUAUUUUUUGUUAGAGAUGGUCGAAUUUUCAUUAAAAAAAUCAUGUGGCGGCUCUUAUCGAUAUCGAUAAGCAGUGGCCAUGUUAUCAAACUUAUUC .....((((((((((..........((....))(((((........))))).))))))))))(((((.((((((((((....))))))).))).)))))................ (-22.61 = -23.83 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:02 2006