Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,426,343 – 10,426,434 |
Length | 91 |
Max. P | 0.523551 |
Location | 10,426,343 – 10,426,434 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 82.19 |
Mean single sequence MFE | -18.70 |
Consensus MFE | -11.98 |
Energy contribution | -12.02 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.15 |
Mean z-score | -1.68 |
Structure conservation index | 0.64 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523551 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10426343 91 + 22407834 AUUGUUUUAUUUAUUCGCAUGCAUGUUUGUAUGUAUGUA--UGCCUAUGUAAAUACGAAAUCGCAACCGCGAAAGUAAGAAUCUAU---GAAUUAA .....(((((..(((((((((((((........))))))--))).........(((....((((....))))..))).))))..))---))).... ( -20.50) >DroSec_CAF1 2612 94 + 1 AUUGUUUUAUUUAUUCGCAUGCAUGUUUGUAUGUAUAUA--UGCCUAUGUAAAUACGAAAUCGAAACCGCGAAAUUAUGAAUCUUUCGCUAAUUAA ...(((((.....((((((((((....))))))((((((--....))))))....))))...))))).((((((.........))))))....... ( -15.20) >DroSim_CAF1 2595 91 + 1 AUUGUUUUAUUUAUUCGCAUGCAUGUUUGUAUGUAUGUA--UGCCUAUGUAAAUACGAAAUCGCAACCGCGAAAUUAAGAAUCUAU---GAACUAA .....(((((..(((((((((((((........))))))--)))................((((....))))......))))..))---))).... ( -19.50) >DroEre_CAF1 2598 85 + 1 AUUGUUUUAUUUAUUCGCAUGCAUGGUUGUAUGUAUGUAUAAGCCAAUGUAAAUAUGAAAUCGUAACCGCGAA----A----CUAU---AGAUUAC .....(((((...(((((.(((((((((((((....)))).)))).)))))..((((....))))...)))))----.----..))---))).... ( -18.00) >DroYak_CAF1 2560 85 + 1 UUUGUUAU----AUUCGCAUGCAUGUUUGUAUGCAUGUGUAAGCCAAUGUAAAUAUGAAAUCGUAACCGCGAAAGUAA----CUAU---AGAUUAC ...(((((----.(((((((((((((......)))))))).............((((....))))...))))).))))----)...---....... ( -20.30) >consensus AUUGUUUUAUUUAUUCGCAUGCAUGUUUGUAUGUAUGUA__UGCCUAUGUAAAUACGAAAUCGCAACCGCGAAAGUAAGAAUCUAU___AAAUUAA .............(((((.(((...(((((((.(((((........))))).)))))))...)))...)))))....................... (-11.98 = -12.02 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:01 2006