Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,116,365 – 1,116,463 |
Length | 98 |
Max. P | 0.873531 |
Location | 1,116,365 – 1,116,463 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 92.30 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -21.76 |
Energy contribution | -23.80 |
Covariance contribution | 2.04 |
Combinations/Pair | 1.03 |
Mean z-score | -2.20 |
Structure conservation index | 0.76 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873531 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1116365 98 + 22407834 UCCAGGAAAU-UUGGCUUUGGUUCGAGUUACGCAAAUUUCGACAGUGGGAGAUUCCACUCGUUGACUGCAACUCACCAUGGCGAAAUCACGUUUCCAUU ....((((((-((.(((.((((..(((((..(((....(((((((((((....)))))).))))).)))))))))))).))).)).....))))))... ( -32.40) >DroSec_CAF1 3141 99 + 1 UCCAGGAAAUUUUGGCUUUGGUUCGAGUUACGCAAAAUUCGACAGUGGGAGGUUCCACUCGUUAAGUGCAACUCACCAUGGCGAAAUCACGUUUCCAUU ....(((((((((.(((.((((..(((((..(((...((.(((((((((....)))))).))))).)))))))))))).))).)))....))))))... ( -30.80) >DroSim_CAF1 3146 99 + 1 UCCAGGAAAUUUUGGCUUUGGUUCGAGUUACGCAAAAUUCGACAGUGGGAGAUUCCACUCGUUAACUGCAACUCACCAUGGCGAAAUCACGUUUCCAUU ....(((((((((.(((.((((..(((((..(((.....(((..(((((....)))))))).....)))))))))))).))).)))....))))))... ( -29.70) >DroEre_CAF1 3431 98 + 1 UCCAGGAAAU-UUAACUUUGGUUCGAGCUACGUGAAAUUCGACACUGGGAGAUUCCACUCAUUGACUUCAACUCACCAUGGCGAAAUCACGUUUCCACU ....(((((.-.......((((....))))(((((..((((.((.((((((......))).(((....)))....))))).)))).))))))))))... ( -21.20) >DroYak_CAF1 3434 98 + 1 UGCAGGAAAU-UUGGCUUUGGUUCGAGUUACGCAAAAUUCGACACUGGGAGAUUCCACUCAGUGACUUCAACUCACCAUGGCGAAAUCACGUUUCCACU ....((((((-((.(((.(((((((((((......)))))))(((((((........)))))))..........)))).))).)).....))))))... ( -29.00) >consensus UCCAGGAAAU_UUGGCUUUGGUUCGAGUUACGCAAAAUUCGACAGUGGGAGAUUCCACUCGUUGACUGCAACUCACCAUGGCGAAAUCACGUUUCCAUU ....((((((.((.(((.((((..(((((..(((....(((((((((((....)))))).))))).)))))))))))).))).)).....))))))... (-21.76 = -23.80 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:50 2006