Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,409,746 – 10,409,866 |
Length | 120 |
Max. P | 0.858759 |
Location | 10,409,746 – 10,409,866 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.17 |
Mean single sequence MFE | -36.63 |
Consensus MFE | -36.33 |
Energy contribution | -35.58 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.11 |
Mean z-score | -0.85 |
Structure conservation index | 0.99 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10409746 120 - 22407834 CGAAGAUCAGACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGAAUCUUGGCUUUGACAUUUUCGAUAGUAUCCGACGGUUCGACCUCAAGAGUGAUGGUCUUGCCCGUGAGGGUCU ...(((((((......)))))))(((((....)))))........(((((((((((((((.....)))).))...)))).)))))(((((((....))).))))..((((....)))).. ( -37.80) >DroGri_CAF1 1761 120 - 1 CAAAGAUUAAACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGGAUCUUGGCUUUGACAUUUUCGAUGGUAUCCGACGGUUCGACCUCAAGAGUGAUGGUCUUACCCGUGAGGGUUU ..(((((((...(((...((((((((.(((.......))).))).)))))..))).....((((((.((.(((..((...))....))))).)))))).)))))))((((....)))).. ( -34.40) >DroEre_CAF1 1783 120 - 1 CGAAGAUCAGACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGAAUCUUGGCUUUGACAUUUUCGAUAGUAUCCGAUGGUUCGACCUCAAGAGUGAUGGUCUUGCCCGUGAGGGUCU ...(((((((......)))))))(((((....)))))........(((((((((((((((.....)))).))...)))).)))))(((((((....))).))))..((((....)))).. ( -37.80) >DroYak_CAF1 1004 120 - 1 CGAAGAUCAGACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGAAUCUUGGCUUUGACAUUUUCGAUAGUAUCCGACGGUUCGACCUCAAGAGUGAUGGUCUUGCCCGUGAGGGUCU ...(((((((......)))))))(((((....)))))........(((((((((((((((.....)))).))...)))).)))))(((((((....))).))))..((((....)))).. ( -37.80) >DroMoj_CAF1 3888 120 - 1 CAAAGAUUAGACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGGAUCUUGGCUUUGACAUUCUCGAUGGUAUCCGACGGUUCGACCUCAAGAGUGAUGGUCUUACCCGUUAGGGUUU ..(((((((...(((...((((((((.(((.......))).))).)))))..))).....((((((.((.(((..((...))....))))).)))))).)))))))((((....)))).. ( -34.00) >DroAna_CAF1 1884 120 - 1 CGAAGAUCAGACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGAAUCUUGGCUUUGACAUUUUCGAUGGUAUCCGACGGUUCGACCUCAAGAGUGAUGGUCUUGCCCGUGAGGGUCU ...(((((((......)))))))(((((....)))))........(((((((((......((((...))))....)))).)))))(((((((....))).))))..((((....)))).. ( -38.00) >consensus CGAAGAUCAGACGCUGCUGAUCUGGAGGAAUUCCUUCUUUGUCCUGAAUCUUGGCUUUGACAUUUUCGAUAGUAUCCGACGGUUCGACCUCAAGAGUGAUGGUCUUGCCCGUGAGGGUCU ...(((((((......)))))))(((((....)))))........(((((((((((((((.....)))).))...)))).)))))(((((((....))).))))..((((....)))).. (-36.33 = -35.58 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:52 2006