| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,403,653 – 10,403,764 |
| Length | 111 |
| Max. P | 0.718256 |
| Location | 10,403,653 – 10,403,764 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.15 |
| Mean single sequence MFE | -21.19 |
| Consensus MFE | -13.92 |
| Energy contribution | -14.03 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.718256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10403653 111 - 22407834 AUAUUAAUCUGCGCGAUGUUAUUUGCACCUCAAAGGUAAUAUUUUAAUUAAAUAUGUAUGUAUAUGUAAUUAAUAUGUAGAUUGCCGGUGUGCAAAAUAUGCGACAACUGG ....((((((((((((......))))(((.....)))......(((((((.(((((....))))).)))))))...))))))))(((((.((((.....))))...))))) ( -27.00) >DroSec_CAF1 468 85 - 1 AUAUUAAUCUGCGCGAUGUUAUUUGCACCUCAAAGGUAAUAUUUUAUUUAAAUA---------------------UGUAGAUGGCCGGUGUGCAAAAUUCGCGACA----- .........((((((..((((((((((((.....))).((((((.....)))))---------------------))))))))))...))))))............----- ( -20.00) >DroSim_CAF1 870 85 - 1 AUAUUAAUCUGCGCGAUGUUAUUUGCACCUCAAAGGUAAUAUUUUAAUUAAAUA---------------------UGUAGAUUGCCGGUGCUCAAAAUUUGCGACA----- ...........(((((........(((((.(((.....((((((.....)))))---------------------).....)))..))))).......)))))...----- ( -16.56) >consensus AUAUUAAUCUGCGCGAUGUUAUUUGCACCUCAAAGGUAAUAUUUUAAUUAAAUA_____________________UGUAGAUUGCCGGUGUGCAAAAUUUGCGACA_____ .........((((((..(..(((((((((.....)))..(((((.....)))))......................))))))..)...))))))................. (-13.92 = -14.03 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:50 2006