Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,394,162 – 10,394,282 |
Length | 120 |
Max. P | 0.654639 |
Location | 10,394,162 – 10,394,282 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.39 |
Mean single sequence MFE | -48.50 |
Consensus MFE | -43.07 |
Energy contribution | -43.35 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.14 |
Mean z-score | -1.32 |
Structure conservation index | 0.89 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10394162 120 - 22407834 CUUCGUGGAAACCGUUCAGAAGCGUGGAGCCGCUGUCAUUGCGGCCCGCAAAAUGUCAUCGGCCAUGUCGGCGGCGAAGGCCGCUUGCGAUCACAUGCACGACUGGUGGAACGGCACUGC ....(..(...((((((......((((.(((((.......)))))))))............((((.(((((((((....))))).((((......)))))))))))).))))))..)..) ( -52.70) >DroSec_CAF1 9113 120 - 1 CUUCGUGGAAACCGUACAGAAGCGUGGAGCCGCCGUCAUUGCGGCCCGCAAAAUGUCAUCGGCCAUGUCAGCGGCCAAGGCCGCUUGCGAUCACAUGCACGACUGGUGGAACGGCACUGC ...((.(....)))..(((....((((.(((((.......)))))))))....((((.((.((((.(((((((((....))))))((((......)))).))))))).))..))))))). ( -48.90) >DroSim_CAF1 9036 120 - 1 CUUCGUGGAAACCGUACAGAAGCGUGGAGCCGCCGUCAUUGCGGCCCGCAAAAUGUCAUCGGCCAUGUCGGCGGCCAAGGCCGCUUGCGAUCACAUGCACGACUGGUGGAACGGCACUGC ...((.(....)))..(((....((((.(((((.......)))))))))....((((.((.((((.(((((((((....))))).((((......)))))))))))).))..))))))). ( -50.30) >DroEre_CAF1 9571 120 - 1 CUUCGUGGAAACCGUUCAGAAACGAGGAGCAACAGUCAUUGCAGCCCGCAAAAUGUCAUCGGCCAUGUCGGCGGCCAAGGCCGCUUGUGAUCACAUGCACGACUGGUGGAACGGCACUGC ((((((.(((....)))....)))))).....((((..((((.....))))...(((.((.((((.(((((((((....)))))).(((........)))))))))).))..))))))). ( -40.30) >DroYak_CAF1 9696 120 - 1 CUUCGUGGAAACCGUUCAGAAGAGAGGAGCAGCCGUCAUUGCGGCCCGCAAAAUGUCAUCGGCCAUGUCGGCGGCCAAGGCCGCUUGUGAUCACAUGCACGACUGGUGGAACGGCACUGC ....(..(...((((((.((.((.(...((.(((((....)))))..))....).)).)).((((.(((((((((....)))))).(((........)))))))))).))))))..)..) ( -44.40) >DroAna_CAF1 7970 120 - 1 CUUCGUGGAGACCGUGCAGAAGCGCGGUGCCGCCGUCAUCGCGGCUCGCAAAAUGUCAUCCGCCAUGUCGGCCGCCAAGGCUGCCUGCGACCAUAUGCAUGACUGGUGGAAUGGCACUGC ....((((..(((((((....)))))))(((((.......)))))))))....((((((((((((.((((((.((....)).)))((((......)))).))))))))).)))))).... ( -54.40) >consensus CUUCGUGGAAACCGUUCAGAAGCGUGGAGCCGCCGUCAUUGCGGCCCGCAAAAUGUCAUCGGCCAUGUCGGCGGCCAAGGCCGCUUGCGAUCACAUGCACGACUGGUGGAACGGCACUGC ...((.(....)))..(((....((((.(((((.......)))))))))....((((.((.((((.(((((((((....))))))(((........))).))))))).))..))))))). (-43.07 = -43.35 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:45 2006