| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,390,464 – 10,390,579 |
| Length | 115 |
| Max. P | 0.782912 |
| Location | 10,390,464 – 10,390,579 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.51 |
| Mean single sequence MFE | -42.72 |
| Consensus MFE | -23.88 |
| Energy contribution | -26.30 |
| Covariance contribution | 2.42 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.782912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10390464 115 - 22407834 CCUCCAAUUCCACCGGAGGUGGGACGAAAAGAGCUAAUCGGCGGCAGACCCGUGGUCACCGGGCAGUGCAUACCAUCGGCACCGACGCCGCCACCACCACCU---CCGCCCAUUCCGA-- .............(((((((((........((.....))((((((.(.((((.(....)))))).((((.........))))....))))))....))))))---)))..........-- ( -44.50) >DroSec_CAF1 5375 115 - 1 CCUCCAAUUCCACCGGAGGUGGCACGAAAAGAACUAAUCGGCGGCAGACCCGUGGUCACCGGACAGUGCAUACCAUCGGGACCGACGCCGCCACCGCCACCU---CCGCCCAUUCCGA-- .............((((((((((.......((.....))((((((.(.(((((((((((......)))...)))).))))..)...))))))...)))))))---)))..........-- ( -46.80) >DroSim_CAF1 5295 115 - 1 CCUCCAAUUCCACCGGAGGUGGCACGAAAAGAACUAAUCGGCGGCAGACCCGUGGUCACCGGGCAGUGCAUACCAUCGGCACCGACGCCGCCACCGCCACCU---CCGCCCAUUCCGA-- .............((((((((((.......((.....))((((((.(.((((.(....)))))).((((.........))))....))))))...)))))))---)))..........-- ( -47.30) >DroEre_CAF1 5776 115 - 1 CCUCCAAUUCCACCGGAGGUGGCACGAAAAGAGCUGAUCGGCGGCAGGCCCGUGGUUACCGGGCAGUGCAUACCAUCGGCGCCGACGCCGCCACCGCCACCU---CCGCCCAUUCCCA-- .............((((((((((.......((.....))((((((..(((((.(....)))))).((((.........))))....))))))...)))))))---)))..........-- ( -51.30) >DroYak_CAF1 5887 115 - 1 CCUCCAAUUCCACCGGAGGUGGCACGAAAAGAGCUGAUCGGUGGCAGACCCGUGGUUACCGGGCAGUGCAUACCAUCGGCUCCGACACCGCCACCGCCACCU---CCGCCCAUUCCCA-- .............((((((((((.......((((((((.(((((((..((((.(....)))))...))).))))))))))))((....)).....)))))))---)))..........-- ( -48.40) >DroMoj_CAF1 8613 105 - 1 A------AAGAACCCGAGCCACCACGAAACGAACUCAUUGGAGGAAGAGAUGUCGAUGCCGGACUGUGCAUACCAAU----CUGA-----CCACUUUCACCUCCUAUGUGCAUGCCAACA .------........(.((...(((((.......))...(((((...((((....((((........))))....))----))((-----......)).)))))...)))...))).... ( -18.00) >consensus CCUCCAAUUCCACCGGAGGUGGCACGAAAAGAACUAAUCGGCGGCAGACCCGUGGUCACCGGGCAGUGCAUACCAUCGGCACCGACGCCGCCACCGCCACCU___CCGCCCAUUCCGA__ .............((((((((((.......((.....))((((((.(((.....)))..(((((.(((.....)))..)).)))..))))))...)))))))...)))............ (-23.88 = -26.30 + 2.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:40 2006