Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,111,179 – 1,111,279 |
Length | 100 |
Max. P | 0.679671 |
Location | 1,111,179 – 1,111,279 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 86.30 |
Mean single sequence MFE | -23.27 |
Consensus MFE | -21.35 |
Energy contribution | -21.13 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.31 |
Structure conservation index | 0.92 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679671 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1111179 100 - 22407834 GAUACUCCGUGAUGGCCUGGAAAUGGAAAAUAGUUAAAGGAAAUUGGCAACGGAAGUGCUAAAUGGUUCCAUCAUCAGGGUUUUUCAUUACUUUCAUUGA ((....((.((((((((.......))............((((.((((((.(....)))))))....)))).)))))).))....)).............. ( -24.80) >DroSec_CAF1 1215 92 - 1 GAUACUCCGUGAUGGCCUGUGAAUGGAAAGUAGUUAAAGGAAAUUGGCAACAGAACUGCUAAAAUGUUCCAUCAUCAGGGUUUUUCCACACU-------- ........(((.((((((((((.((((((((((((........(((....))))))))))......)))))))).))))......)))))).-------- ( -23.30) >DroSim_CAF1 1100 92 - 1 GAUACUCCGUGAUGGCCUGUGAAUGGAAAGUAGUUAAAGGAAAUUGGCAACAGAACUGCCAAAAUAUUCCAUCAUCAGGGUUUUUCCACACU-------- ((....((.((((((((.......))............((((.((((((.......))))))....)))).)))))).))....))......-------- ( -21.70) >consensus GAUACUCCGUGAUGGCCUGUGAAUGGAAAGUAGUUAAAGGAAAUUGGCAACAGAACUGCUAAAAUGUUCCAUCAUCAGGGUUUUUCCACACU________ ((....((.((((((((.......))............((((.((((((.......))))))....)))).)))))).))....)).............. (-21.35 = -21.13 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:49 2006