Locus 3557

Sequence ID 2L_DroMel_CAF1
Location 10,372,396 – 10,372,503
Length 107
Max. P 0.653542
window5620

overview

Window 0

Location 10,372,396 – 10,372,503
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 92.62
Mean single sequence MFE -25.12
Consensus MFE -20.56
Energy contribution -20.60
Covariance contribution 0.04
Combinations/Pair 1.16
Mean z-score -1.43
Structure conservation index 0.82
SVM decision value 0.25
SVM RNA-class probability 0.653542
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10372396 107 + 22407834
UUGGCGAAACGCCACGCUGAUGGUAAUUUGUACCGUUAGCCGCCAUUCCGUUUCCACUCAUUCCGCUUCCGACCAUACCAUUCCCAGCCAUUCCGUGCUUUUGCAUG
.((((((((((....((((((((((.....))))))))))........)))))).........((....))...............))))...(((((....))))) ( -27.60)
>DroSec_CAF1 3796 107 + 1
UUGGCGAAACGCCACGCUGGUGGUAAUUUGUACCGUUAGUCGCCAUUCCGUUUCCACUCAUUCCGCUUCCGACCAUUCCGUUCCCAGCCAUUCCGUGCUUCUGCAUG
.((((((((((...((((..(((((.....)))))..)).))......)))))).........((....))...............))))...(((((....))))) ( -24.50)
>DroSim_CAF1 3802 107 + 1
UUGGCGAAACGCCACGCUGGUGGUAAUUUGUACCGUUAGCCGCCAUUCCGUUUCCACUCAUUCCGCUUCCGACCAUUCCAUUCCCAGCCAUUCCGUGCUUCUGCAUG
.((((((((((....(((..(((((.....)))))..)))........)))))).........((....))...............))))...(((((....))))) ( -25.10)
>DroEre_CAF1 3898 107 + 1
UCGGCGAAACGCCACGCUGAUGGUAAUUUCCACCGUUAGCCGCCAUUCCGUUUCCACUCAUUCCGCUCGCCACCAUUCCGUUUCCACCCAUUCCAUGCUUCUGCAUG
..(((((...((...(((((((((.......)))))))))((......))..............)))))))......................(((((....))))) ( -25.30)
>DroYak_CAF1 3887 107 + 1
UCGGCGAAACGCCACGCUGAUGGUAAUUUGCACCGUUAGCCGCCAUUCCGUUUCCACUCAUUCCGCUCGCCACCAUUCCGUUUCCAACCAUUCCGUGCUUCUGCAUC
..(((((...((...(((((((((.......)))))))))((......))..............))))))).......................((((....)))). ( -23.10)
>consensus
UUGGCGAAACGCCACGCUGAUGGUAAUUUGUACCGUUAGCCGCCAUUCCGUUUCCACUCAUUCCGCUUCCGACCAUUCCGUUCCCAGCCAUUCCGUGCUUCUGCAUG
..((((...))))..((((((((((.....)))))))))).....................................................(((((....))))) (-20.56 = -20.60 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:28 2006