Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,364,814 – 10,364,911 |
Length | 97 |
Max. P | 0.588150 |
Location | 10,364,814 – 10,364,911 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.18 |
Mean single sequence MFE | -25.03 |
Consensus MFE | -13.59 |
Energy contribution | -13.40 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.23 |
Mean z-score | -2.13 |
Structure conservation index | 0.54 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588150 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10364814 97 + 22407834 CAUAUGUUUAAAGACGUGGCAGUGUCACCAGUGCAACAAU----ACAUCUCUUGUAU-----------------GUAUGUAAACAUAUGCUGUUAAUGUAUAAUAUUUCCUGU--CUGAU ((((((((((...((((.(((.((....)).))).)).((----(((.....)))))-----------------))...))))))))))........................--..... ( -20.70) >DroSim_CAF1 6589 97 + 1 CAUAUGUUUAAAGACGUGGCAGUGUCACCAGUGCAACAAU----ACAUCUCUUGUAU-----------------GUAUGUAAACAUAUGCUGUUAAUGUAUAAUAUUUCCUGU--CUGAU ((((((((((...((((.(((.((....)).))).)).((----(((.....)))))-----------------))...))))))))))........................--..... ( -20.70) >DroYak_CAF1 6574 97 + 1 CAUAUGUUUAAAGACGUGGCAGUGUCACCAGUGCAACAAU----ACAUCUCUUGUAU-----------------GUAUGUAAACAUAUGCUGUUAAUGUAUAAUAUUUCCUGU--CUGAU ((((((((((...((((.(((.((....)).))).)).((----(((.....)))))-----------------))...))))))))))........................--..... ( -20.70) >DroAna_CAF1 7610 120 + 1 UGUAUGUUUAAAGACGUGGCAGUGUCACCAGUGCAGUAACUCAAACAUUUCGCAUAUGUAUGUAUUAUAUGUGCGUAUGUAAUCAUGUGCUGUAAAUAGAAGACAUUUCCAGUUUUUAAU .......((((((((.(((.((((((.....(((((((......((((..((((((((((.....)))))))))).)))).......))))))).......)))))).))))))))))). ( -38.02) >consensus CAUAUGUUUAAAGACGUGGCAGUGUCACCAGUGCAACAAU____ACAUCUCUUGUAU_________________GUAUGUAAACAUAUGCUGUUAAUGUAUAAUAUUUCCUGU__CUGAU ((((((((((...((((.(((.((....)).))).)).......(((.....)))...................))...))))))))))............................... (-13.59 = -13.40 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:27 2006