| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,359,810 – 10,359,930 |
| Length | 120 |
| Max. P | 0.721009 |
| Location | 10,359,810 – 10,359,930 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.58 |
| Mean single sequence MFE | -41.00 |
| Consensus MFE | -19.78 |
| Energy contribution | -20.32 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.721009 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10359810 120 - 22407834 AUUGAAUUGCACGUUGGAGCUGUUCCAGGCCUUGGUGCAAACACAGCUGUCUGGCCUGGACUAUCAUUCGCUCGUUUCGAAGCUAAUGGCACCAGUUCUGGGUGGCAACGGUGACGUCAA .((((.((((((.(..((((((.((((((((.....((.......)).....))))))))...(((((.(((((...)).))).)))))...))))))..))).))))((....)))))) ( -43.00) >DroGri_CAF1 19951 116 - 1 UUUGCAGUGCACCUUGGAUCUGUUUCAGGCGCUGGUGCAGGCACAGCUGUCUGGGCUGGAUUAUCACUCACUGGUGUCCAAGCUAAUGGAGCCUGUGUUGAAUGUUAGCG---AUGGCG- ..(((..((((((...(.((((...)))))...)))))).)))..((((((...(((((....(((..(((.(((.((((......))))))).))).)))...))))))---))))).- ( -37.90) >DroWil_CAF1 1503 117 - 1 UUUAAAUUGCACUUUGGAGCUAUUCCAAGCCCUGGUGCAGACACAGCUUUCUGGCUUGGAUUAUCAAUCCCUUGUGUCCAAAUUAAUGGAGCCAGUUCUAAUUGGCAG---UGAUGCAUC .......((((((..((.(((......))))).))))))(((((((((....)))..((((.....))))..))))))............((((((....))))))..---......... ( -33.50) >DroYak_CAF1 1501 120 - 1 AUUGAAUUGCACUUUGGAGCUGUUCCAGGCCCUGGUGCAAACACAGCUGACUGGCCUGGACUACCAUUCGCUGGUCUCGAAGCUUAUGGCACCAGUUUUGGCUGGCAACGGCGAUGCCAA .............((((.((((((((((.(((((((((......(((((((..((.(((....)))...))..)))....))))....)))))))....)))))).))))))....)))) ( -45.60) >DroMoj_CAF1 13116 116 - 1 AUUACAAUGCACUUUGGAUCUAUUCCAAGCUCUUGUGCAGGCACAGCUCACUGGCUUAGACUAUCACUCGCUGGUGUCUAAGCUAAUGGAGCCCGUCCUGAAGGGCAGCG---AUCCCU- .......(((...(((((.....)))))((((((...((((.((.((((..((((((((((.((((.....))))))))))))))...))))..)))))))))))).)))---......- ( -43.60) >DroAna_CAF1 1498 120 - 1 AUUGAACUGCACCUUGGAGCUGUUUCAAGCUUUAGUGCAAACCCAGCUGACUGGCUUGGACUAUCAAUCGCUGGUCUCGAAGUUGAUGGGUCCAGUUUUAGCUGGCGGAGGGGAUGCUAC .......(((((..(((((((......))))))))))))..(((..(((.(..(((((((((((((((..(.......)..)))))).)))))).....)))..))))..)))....... ( -42.40) >consensus AUUGAAUUGCACUUUGGAGCUGUUCCAAGCCCUGGUGCAAACACAGCUGACUGGCCUGGACUAUCAAUCGCUGGUGUCGAAGCUAAUGGAGCCAGUUCUGAAUGGCAGCG__GAUGCCA_ ......((((...(((((((((.((((((((.....((.......)).....))))))))...(((...(((........)))...)))...)))))))))...))))............ (-19.78 = -20.32 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:25 2006